DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and Rbm4b

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_079993.2 Gene:Rbm4b / 66704 MGIID:1913954 Length:357 Species:Mus musculus


Alignment Length:105 Identity:26/105 - (24%)
Similarity:38/105 - (36%) Gaps:24/105 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 LFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDLYQGLELF 136
            ||.|||....||:.:..:|.|.|.:....|       .:|:|||..:...|   |.|..:.|..:
Mouse     4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-------IKNYGFVHIEDKTA---AEDAIRNLHHY 58

  Fly   137 --------------QKKVTIKQQGGKQLPAYNQSRLRNQF 162
                          :.|.:.|...|...|......||.:|
Mouse    59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKF 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 20/84 (24%)
Rbm4bNP_079993.2 RRM1_RBM4 2..68 CDD:410018 19/73 (26%)
RRM2_RBM4 78..144 CDD:410019 6/21 (29%)
PTZ00368 <145..>181 CDD:173561
ZnF_C2HC 161..176 CDD:197667
Interaction with TNPO3. /evidence=ECO:0000250 196..357
Blue background indicates that the domain is not in the aligned region.

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