DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11454 and Rox8

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:190 Identity:48/190 - (25%)
Similarity:76/190 - (40%) Gaps:33/190 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 DEEQ-RTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDL 129
            ||.| :||:.||||..|:|::|..:|...||::..:|..:....|  :.|:.|....|...||..
  Fly     2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTA 64

  Fly   130 YQGLELFQKKVTIK--QQGGKQLPAYNQSRLRNQFMMEALP--QPSPLRHARHSLHNGKPYDRNP 190
            .......:|::.:.  ...|.| |..:.|...:.|:.:..|  :...||.|           ..|
  Fly    65 MNKRLFLEKEIKVNWATSPGNQ-PKTDISSHHHIFVGDLSPEIETETLREA-----------FAP 117

  Fly   191 FGHNADQRRRSDSSVMER---------NRLKPQQHHQHMQG---GSRRSDQRSNNKRRLL 238
            ||..::.|...|...|:.         .:.:.:...|.|.|   |||  ..|:|...|.|
  Fly   118 FGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSR--SIRTNWSTRKL 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 21/74 (28%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 19/72 (26%)
RRM2_TIA1_like 96..170 CDD:409789 18/86 (21%)
RRM_SF 221..292 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.