DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and tia1l

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:194 Identity:47/194 - (24%)
Similarity:75/194 - (38%) Gaps:37/194 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 DEEQ-RTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDL 129
            ||:| |||:.|||...|||.::.:||.|.||.:..::..|..|.. .:.||.:........||..
Zfish     4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGND-PYCFVEFYENRHAAAALAA 67

  Fly   130 YQGLELFQKKVTIKQQGGKQLPAYNQSRLRNQFMMEALPQPS--PLRHARHSLHNGKPYDRNPFG 192
            ..|.::..|.:.:...........:.|...:.|:.:..|:.|  .:|.|           ..|||
Zfish    68 MNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAA-----------FAPFG 121

  Fly   193 HNADQRRRSDSSVMER---------NRLKPQQHHQHMQG---GSRR----------SDQRSNNK 234
            ..:|.|...|.:..:.         |:...:...|.|.|   |.|:          |..:|||:
Zfish   122 KISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNE 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 23/74 (31%)
tia1lNP_956476.1 RRM_SF 10..83 CDD:473069 21/73 (29%)
RRM2_TIA1_like 98..172 CDD:409789 17/84 (20%)
RRM3_TIAR 206..278 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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