DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and hnrnpm

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:XP_004911113.1 Gene:hnrnpm / 100489127 XenbaseID:XB-GENE-993962 Length:744 Species:Xenopus tropicalis


Alignment Length:137 Identity:40/137 - (29%)
Similarity:55/137 - (40%) Gaps:13/137 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 TLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDLYQGLEL 135
            |:|..|||..|..:.|.|||..||.:....:..|.:|:.|..|.|||::......|:.::.|..|
 Frog   244 TVFVANLDYSVGWKKLKEVFGIAGTVVRADVLEDKDGKSRGIGTVTYEQPIEAVQAISMFNGQPL 308

  Fly   136 FQKKVTIKQQG-----GKQLPAYNQSRL---RNQFMMEALP--QPSPLRHARHSL---HNGKPYD 187
            |.:.:.:|...     |...||....:|   .....|...|  ||....|.|.|.   ..|...|
 Frog   309 FDRPMMVKMDDKSMPKGDLFPADRPPQLPRGLGGIGMGLGPGGQPIDANHLRGSTMGGPGGMSMD 373

  Fly   188 RNPFGHN 194
            ...||.|
 Frog   374 SMGFGMN 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 23/71 (32%)
hnrnpmXP_004911113.1 HnRNP_M_NLS 48..72 CDD:463289
RRM1_hnRNPM 74..149 CDD:410058
PABP-1234 76..>388 CDD:130689 40/137 (29%)
RRM2_hnRNPM_like 245..318 CDD:409820 23/72 (32%)
RRM3_hnRNPM 668..744 CDD:410062
Blue background indicates that the domain is not in the aligned region.

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