DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and rbm11

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_001096253.1 Gene:rbm11 / 100124814 XenbaseID:XB-GENE-975967 Length:243 Species:Xenopus tropicalis


Alignment Length:161 Identity:55/161 - (34%)
Similarity:77/161 - (47%) Gaps:27/161 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 EDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDL 129
            ::|..||||.||||..|.||||||:||||||:..|.|..|..|..:.||||.::...:||:|..|
 Frog     5 QEELDRTLFVGNLDCSVNEEILYELFLQAGPLTKVTIAKDKEGNSKAFGFVCFKHSESVPYAKAL 69

  Fly   130 YQGLELFQKKVTIKQQGGKQLPAYNQSRLR---NQFMMEALPQPSPLRHARHSLHNGKPYDRNPF 191
            ..|:.|:.:.:.:..|.|....|...:.|:   |.|:      |:|                ..:
 Frog    70 LNGIRLYGRPIKVHYQFGSSFSAEENNTLQSSDNGFI------PNP----------------QDY 112

  Fly   192 GHNADQRRRSDSSVMERNRLKPQQHHQHMQG 222
            |.||.:.|.:..|.|  |.:..||.....||
 Frog   113 GMNAPEDRSAAFSPM--NFVDFQQAFMFFQG 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 35/73 (48%)
rbm11NP_001096253.1 PABP-1234 <3..>174 CDD:130689 55/161 (34%)
RRM_RBM11 9..83 CDD:410006 35/73 (48%)

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