DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3164 and ABCG40

DIOPT Version :9

Sequence 1:NP_722605.1 Gene:CG3164 / 33171 FlyBaseID:FBgn0025683 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_173005.1 Gene:ABCG40 / 838122 AraportID:AT1G15520 Length:1423 Species:Arabidopsis thaliana


Alignment Length:652 Identity:168/652 - (25%)
Similarity:292/652 - (44%) Gaps:127/652 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 AGAGQLKAQIVPAQPKTLQHLPKRPAVDLAFHNLTYRV-------KEGNRSNAKTILKGVSGRLR 76
            |||.:.:..::|.:|.:           :.|.|:.|.|       ::|.:.:...:||||:|..|
plant   808 AGANKKRGMVLPFEPHS-----------ITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFR 861

  Fly    77 SGELTAIMGPSGAGKSTLLNILSGYKTSS-IEGSVTMNGAERNLSAFRKLSAYIMQDNQLHGNLT 140
            .|.|||:||.|||||:||:::|:|.||.. |:|::|::|..:|...|.::|.|..|.:....::|
plant   862 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926

  Fly   141 VQEAMTVATNLKLSKKFSKPEKHSMIDDILLTLSLSEHRYTMT-----RNLSGGQKKRLSIALEL 200
            |.|::..:..|:|.|:..|.::...|::::..:.|:..|..:.     ..||..|:|||:||:||
plant   927 VYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVEL 991

  Fly   201 VSNPPIMFFDEPTSGLDSSTCFQCIHLLKMLAAGGRTVICTIHQPSARLFEMFDQLYTL-ADGQC 264
            |:||.|:|.||||||||:......:..::.....||||:|||||||..:||.||:|:.| ..|:.
plant   992 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEE 1056

  Fly   265 VYQG----STKQLVPFLST---LNLECPSYHNPASYVIEVSCGEHGDHTRKLVDAIDNGKRDVRS 322
            :|.|    .:..|:.:..:   :|.....| |||::::|||                ...::...
plant  1057 IYVGPLGHESTHLINYFESIQGINKITEGY-NPATWMLEVS----------------TTSQEAAL 1104

  Fly   323 SADYAGLKARNDLVKVQNLKAILDKNDASSVSGRKYEDNLTLNNGLLNGMVNDIVKEGNVSSALV 387
            ..|:|.:...::|.| :|.:.|  |..:....|.|                 |:......|.:.:
plant  1105 GVDFAQVYKNSELYK-RNKELI--KELSQPAPGSK-----------------DLYFPTQYSQSFL 1149

  Fly   388 TTNERGDAMIDVEKSVNCTTALLTEEITSPERYPTSQFHQFWVVLKRTLLFSY-RDWTLMYLRLF 451
            |               .|..:|               :.|.|         || |:.....:|..
plant  1150 T---------------QCMASL---------------WKQHW---------SYWRNPPYTAVRFL 1175

  Fly   452 AHLLVGFLIGALYYDIG--NDGAKVLSN-LGFLFFNMLFLMYTSMTITILSFPLEMPVLLKENFN 513
            ..:.:..:.|.:::|:|  ....:.||| :|.::..:|||...:.........:|..|..:|...
plant  1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAA 1240

  Fly   514 RWYSLKSYYLAISVADLPFQAIFCVIYVSIVYYFTSQPWELFRFSMFL----SACLLISFVAQSV 574
            ..||...|..|....::|:..:..::|..|||......|...:|..:|    .:.|..:|..   
plant  1241 GMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYG--- 1302

  Fly   575 GLVVGAAMNVQNGVFLAPVMSVPFL----LFSGFFVSFDAIPVYLRWITYLSYIRYGFEGTALAT 635
              ::..||...:  .:|.|:|..|.    |||||.:...::||:..|..:|..:.:...|...:.
plant  1303 --MMAVAMTPNH--HIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQ 1363

  Fly   636 YG 637
            :|
plant  1364 FG 1365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3164NP_722605.1 ABCG_EPDR 44..268 CDD:213180 89/237 (38%)
3a01204 60..699 CDD:273361 158/604 (26%)
ABC2_membrane 431..630 CDD:279410 46/210 (22%)
ABCG40NP_173005.1 PLN03140 10..1423 CDD:215599 168/652 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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