DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3164 and st

DIOPT Version :9

Sequence 1:NP_722605.1 Gene:CG3164 / 33171 FlyBaseID:FBgn0025683 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster


Alignment Length:678 Identity:186/678 - (27%)
Similarity:306/678 - (45%) Gaps:101/678 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PKRPAVDLAFHNL-TYRVKEGNRSNAKTILKGVSGRLRSGELTAIMGPSGAGKSTLLNILSGYKT 103
            |......|.:.:| .|....|:....|.|:...:|.::.|.|.|:||.||:||:||::.|:..:.
  Fly    62 PTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQP 126

  Fly   104 SS--IEGSVTMNGAERNLSAF-RKLSAYIMQDNQLHGNLTVQEAMTVATNLKLSKKFSKPEKHSM 165
            :.  ::|.:.:||  |.:..| .::|.|:.||:...|:|||.|.:....:|:|.::.||.|:..:
  Fly   127 AGTVVQGDILING--RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLI 189

  Fly   166 IDDILLTLSLSEHRYTM------TRNLSGGQKKRLSIALELVSNPPIMFFDEPTSGLDSSTCFQC 224
            |.::|....|.....|.      .:.||||::|||:.|:||::||.|:|.||||:||||.:..|.
  Fly   190 IKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQL 254

  Fly   225 IHLLKMLAAGGRTVICTIHQPSARLFEMFDQLYTLADGQCVYQGSTKQLVPFLSTLNLECPSYHN 289
            :..|..||..|.|::|||||||::||:.|:.:..||||:..:.||.:..:.|.:.....||..:|
  Fly   255 VATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYN 319

  Fly   290 PASYVIEVSCGEHGDHTRKLVDAIDNGKRDVRSSADYAGLKARNDLVKVQNLKAILDKNDASSVS 354
            ||.::|.|...:.|                      |.....|:    .|:|      .|..:||
  Fly   320 PADFLIGVLATDPG----------------------YEQASQRS----AQHL------CDQFAVS 352

  Fly   355 GRKYEDNLTLNNGLLNGMVNDIVKEGNVSSALVTTNERGDAMIDVEKSVNCTTALLTEEITSPER 419
            ....:.::.:|      :...:.:.||........:.||.|..                      
  Fly   353 SAAKQRDMLVN------LEIHMAQSGNFPFDTEVESFRGVAWY---------------------- 389

  Fly   420 YPTSQFHQFWVVLKRTLLFSYRDWTLMYLRLFAHLLVGFLIGALYYDIGNDGAKVLSNLGF-LFF 483
               .:||..|:....|||   ||.|:.:||....:.:.|:|||.:     .|....|.||. ...
  Fly   390 ---KRFHVVWLRASLTLL---RDPTIQWLRFIQKIAMAFIIGACF-----AGTTEPSQLGVQAVQ 443

  Fly   484 NMLFLM-----YTSMTITILSFPLEMPVLLKENFNRWYSLKSYYLAISVADLPFQAIFCVIYVSI 543
            ..||:|     |..|...:..||...|:.::|..:..||...||.|..:|.||...|..:|:|.|
  Fly   444 GALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVII 508

  Fly   544 VYYFTSQPWELFRFSMFLSACLLISFVAQSVGLVVGAAMNVQNGVFLAPVMSVP----FLLFSGF 604
            .|:.|......:.|.:.....:|:..||.:.|.....|.   |.|.||....||    |::.||.
  Fly   509 CYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAF---NSVPLAMAYLVPLDYIFMITSGI 570

  Fly   605 FVSFDAIPVYLRWITYLSYIRYGFEGTALATYGYGREKLRCFQTYCH---FKSPITTLEELDMVN 666
            |:..:::||...|..:||::.|..|....|.:. |.:.:.|||....   |.:....|::.....
  Fly   571 FIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWS-GVQNITCFQESADLPCFHTGQDVLDKYSFNE 634

  Fly   667 ANFTLDIVALIVIFVVLRISAYLFLRWK 694
            :|...:::|::.::....:..|..| |:
  Fly   635 SNVYRNLLAMVGLYFGFHLLGYYCL-WR 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3164NP_722605.1 ABCG_EPDR 44..268 CDD:213180 84/233 (36%)
3a01204 60..699 CDD:273361 181/657 (28%)
ABC2_membrane 431..630 CDD:279410 61/208 (29%)
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 84/233 (36%)
3a01204 67..665 CDD:273361 185/673 (27%)
ABC2_membrane 395..600 CDD:279410 63/215 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - mtm14984
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
76.920

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