DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4822 and st

DIOPT Version :9

Sequence 1:NP_001033861.1 Gene:CG4822 / 33170 FlyBaseID:FBgn0031220 Length:677 Species:Drosophila melanogaster
Sequence 2:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster


Alignment Length:645 Identity:180/645 - (27%)
Similarity:299/645 - (46%) Gaps:105/645 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KYLPSWPAVNLQFSELCYVVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLA- 107
            |:.|:.....|.:.:||.......:..:.|.|:....|......|.|::|.||:|||||::.|| 
  Fly    59 KWSPTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAF 123

  Fly   108 --GFGAVCESGEILVNNSPRDMRVF-RKMSRYIMQTDVLDSQFTVLEMMILAANLKLGKELNLKQ 169
              ..|.|.: |:||:|.  |.:..| .::|.|:.|.|:.....||||.:...|:|:|.:.::.::
  Fly   124 RQPAGTVVQ-GDILING--RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEE 185

  Fly   170 KLEVIDEIL---GMLRLKDT-LNTMAQK--LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
            :..:|.|:|   |:|....| :.:...|  |||||||||..|:||:|||.::|.||||||||..|
  Fly   186 RRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYS 250

  Fly   229 SSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKNFGLCCP 293
            :.|.:|.|..||..|.|::|:||.||:::|:..:.|.:||:|:..:.|...:.:.|..|.|..||
  Fly   251 AQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCP 315

  Fly   294 ITYNPADFIIEVACLEYGGSYHEPMVEAVGNGKVARWSPPAVEGETTTTKTDTTSGASSFYERDQ 358
            ..||||||:|.|...:.|  |.:                  ....:.....|..:.:|:..:||.
  Fly   316 EAYNPADFLIGVLATDPG--YEQ------------------ASQRSAQHLCDQFAVSSAAKQRDM 360

  Fly   359 ---------------FDEEISPKLLEAKCSWWLQYKLLLVRMLIQMWRDKSYIKLKFYMNIVLAL 408
                           ||.|:..   ....:|:.::.::.:|..:.:.||.:...|:|...|.:|.
  Fly   361 LVNLEIHMAQSGNFPFDTEVES---FRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAF 422

  Fly   409 LVGSLYFG------MGTSASKALFNFGFMFTIVIAYLYLPMMPVLLYFPTEINLLKREYNNQWYR 467
            ::|:.:.|      :|..|.:     |.:|.::....|.||..||..||....|..||..:..|.
  Fly   423 IIGACFAGTTEPSQLGVQAVQ-----GALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYS 482

  Fly   468 LSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSQPLEWFRFAMLFTIAFVTALTSDSFGLLISSRL 532
            ...||||.:.:.||.|.|..:|::.|.|.::.....::.|.       |||:..    :|:.:..
  Fly   483 TGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFG-------VTAMCV----VLVMNVA 536

  Fly   533 SLVNAMFMGPVLAVPLILLSIYGIGY----GGGTYIS----PL-MRFLMHLSYLRHSMEGLVASL 588
            :.....|.....:|||.:..:..:.|    ..|.:|.    |: ..:...||::.::.|.:.|:.
  Fly   537 TACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQ 601

  Fly   589 YDYGRADTIC--EDTEIFC-----------SFKKSKV---LLA----FLGFENMHY--LW 626
            :. |..:..|  |..::.|           ||.:|.|   |||    :.||..:.|  ||
  Fly   602 WS-GVQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLW 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4822NP_001033861.1 ABCG_EPDR 51..276 CDD:213180 86/234 (37%)
3a01204 67..654 CDD:273361 175/622 (28%)
ABC2_membrane 381..587 CDD:279410 51/220 (23%)
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 86/234 (37%)
3a01204 67..665 CDD:273361 178/637 (28%)
ABC2_membrane 395..600 CDD:279410 51/220 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438920
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - mtm14984
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
87.850

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