DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4822 and Abca2

DIOPT Version :9

Sequence 1:NP_001033861.1 Gene:CG4822 / 33170 FlyBaseID:FBgn0031220 Length:677 Species:Drosophila melanogaster
Sequence 2:XP_006497672.1 Gene:Abca2 / 11305 MGIID:99606 Length:2464 Species:Mus musculus


Alignment Length:367 Identity:88/367 - (23%)
Similarity:160/367 - (43%) Gaps:63/367 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LEPDQ-----SEDFQTVLGLKYLPS-WPAVNLQFSELCYVVPDQTNASKTKTILRRVNGMFHSHE 87
            :|.||     |..|:...|::..|: .|.|      :|.....:...:..|..|.:::...:.::
Mouse   990 MEEDQACAMESRHFEETRGMEEEPTHLPLV------VCVDKLTKVYKNDKKMALNKLSLNLYENQ 1048

  Fly    88 LTAIIGPSGAGKTTLLNLLAG-FGAVCESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLE 151
            :.:.:|.:||||||.:::|.| |.....|..|..::...:|...||......|.:||..:.||.|
Mouse  1049 VVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEE 1113

  Fly   152 MMILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIF 216
            .:...:.||...:..::::   .|:::..|.|.:..:::.|.||||.:::|.:|:..|.....|.
Mouse  1114 HLWFYSRLKSMAQEEIRKE---TDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAII 1175

  Fly   217 LDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEML-DAVYVLAEG--QCVYQGKG 278
            |||||.|:|.. :.:.|..|.:....|||::.|.|.....  ::| |.:.:::.|  :|.    |
Mouse  1176 LDEPTAGVDPY-ARRAIWDLILKYKPGRTILLSTHHMDEA--DLLGDRIAIISHGKLKCC----G 1233

  Fly   279 SNIVPFLKNF---GLCCPITYNPADFIIEVACLEYGGSYHEPMVEAVGNG--KVARWSPPAVEGE 338
            |.:  |||..   |....:...||:          .|:..||.:.:..:|  :::..|.|.|   
Mouse  1234 SPL--FLKGAYGDGYRLTLVKQPAE----------PGTSQEPGLASSPSGCPRLSSCSEPQV--- 1283

  Fly   339 TTTTKTDTTSGASSFYERDQFDEEISPKLLEAKCSWWLQYKL 380
                        |.|..:     .::..||.:..|..|.|.|
Mouse  1284 ------------SQFIRK-----HVASSLLVSDTSTELSYIL 1308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4822NP_001033861.1 ABCG_EPDR 51..276 CDD:213180 57/228 (25%)
3a01204 67..654 CDD:273361 78/323 (24%)
ABC2_membrane 381..587 CDD:279410 88/367 (24%)
Abca2XP_006497672.1 rim_protein 58..2398 CDD:130324 88/367 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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