DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and GLUR2

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:665 Identity:136/665 - (20%)
Similarity:238/665 - (35%) Gaps:163/665 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 KSYILFLSDPLMT-RKILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNLLVIGE-------- 221
            ::.|.|.|||.:| .|..|......:.:..:.:|     ||...:::|:..  |.|:        
plant   336 RANISFSSDPKLTSMKGGGSLNLGALSIFDQGSQ-----FLDYIVNTNMTG--VTGQIQFLPDRS 393

  Fly   222 ---------SLMADPMRERPY--------VLYTHKLY---ADGLGSNTPVVLTSWIKGALSRPHI 266
                     :::.|..|:..|        ::....||   ::...||..:...:|..|....|..
plant   394 MIQPSYDIINVVDDGFRQIGYWSNHSGLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRG 458

  Fly   267 NLFPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSI--- 328
            .:||:.      |.|.:|...::..|...:..||.|...|    |....:.....|.:::.:   
plant   459 WVFPNN------GRRLRIGVPDRASFKEFVSRLDGSNKVQ----GYAIDVFEAAVKLISYPVPHE 513

  Fly   329 -----DITETP-----TRSNTRGVVDTIQEQIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCA 383
                 |..:.|     ..:.|.||.|.:          :|...|...:.|::|.......|    
plant   514 FVLFGDGLKNPNFNEFVNNVTIGVFDAV----------VGDIAIVTKRTRIVDFTQPYIES---- 564

  Fly   384 AFITLA--SKALPKYRAIMGPFQWPVWVALICVYL--GGIFPIVFTDRLTLSHLMGN------WG 438
            ..:.:|  :|......|.:.||..|:|......:|  |.:..|       |.|.:.:      ..
plant   565 GLVVVAPVTKLNDTPWAFLRPFTPPMWAVTAAFFLIVGSVIWI-------LEHRINDEFRGPPRK 622

  Fly   439 EVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLL---IGAYWLFTI-IITSCYTGSIIAFVTL 499
            ::..:.|:.|.  |..||.         |:|:...|   :...|||.: ||||.||.|:.:.:|:
plant   623 QIVTILWFSFS--TMFFSH---------RENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTV 676

  Fly   500 PAFPDTVDSVLDLLGLFFRVGTLNNGGWETWFQNSTHIPTSRLYKKMEFVGSVDEGIGNVTQSFF 564
            ......:..|..|:....|||.......|.:..:..:|..|||..                    
plant   677 QQLNSPIRGVDTLISSSGRVGFQVGSYAENYMIDELNIARSRLVP-------------------- 721

  Fly   565 WNYAFLGSKAQLEYLVQSNFSDENISRRS--ALHLSEEC--------FALFQIGFLFPRESVYKI 619
                 |||..:....:|:......:..|.  .|.|||.|        |.....||.|||:|...|
plant   722 -----LGSPKEYAAALQNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWGFAFPRDSPLAI 781

  Fly   620 KIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMFLLM 684
            .:.:.||...::|.:.||:::  |:.:.:.|.  |..|.|:      ::..||......|:||:.
plant   782 DMSTAILGLSETGQLQKIHDK--WLSRSNCSN--LNGSVSD------EDSEQLKLRSFWGLFLVC 836

  Fly   685 ALGYFLGATALVSEIVGGITNKCRQIIKRSR---KSAASSWSSASSGSM---LRTNAEQLSHDKR 743
            .:..|:.......:||       |...:..:   ::...|..|:.|.|:   |....|:....||
plant   837 GISCFIALFIYFFKIV-------RDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKR 894

  Fly   744 KANRREAAEVAQKMS 758
            :..|:...:::.|.|
plant   895 RMKRKRNDDLSLKPS 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 63/320 (20%)
Lig_chan 407..662 CDD:278489 63/276 (23%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 17/92 (18%)
GluR_Plant 466..804 CDD:270404 84/400 (21%)
Lig_chan 590..840 CDD:395014 68/302 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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