DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir21a and GLR3.6

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:612 Identity:127/612 - (20%)
Similarity:208/612 - (33%) Gaps:177/612 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 NIVN-----LLVIGE--------------SLM-ADPMRERPYVLYTHKLYADGLGSNTPVVLTSW 256
            |:||     |.|||.              |:| ||.|....:  ...||::.....::..:...|
plant   387 NLVNPAFDVLNVIGTGYTTIGYWFNHSGLSVMPADEMENTSF--SGQKLHSVVWPGHSIKIPRGW 449

  Fly   257 IKGALSRPHINL-FPSKFQF-------------GFAGHRFQISAANQPPFIFRIRTLDSSGMGQL 307
            :.....| |:.: .|::::|             ||....| |:|.|..|:               
plant   450 VFSNNGR-HLRIGVPNRYRFEEVVSVKSNGMITGFCVDVF-IAAINLLPY--------------- 497

  Fly   308 RWDGVEFRLLTMISKRLNFSIDITETPTRSN-----TRGVVDTIQEQIIERTVDIGMSGIYITQE 367
               .|.|.|:...:..        :.|:.|.     |.||.|.            |:..|.|..|
plant   498 ---AVPFELVAFGNGH--------DNPSNSELVRLITTGVYDA------------GVGDITIITE 539

  Fly   368 R---------LMDSAMSVGHSPDCAAFITLASKALPKYRAIMGPFQWPVWVALICVYLGGIFPIV 423
            |         .::|.:.|     .|....|.|.|:    |.:.||...:|:.....:|     ||
plant   540 RTKMADFTQPYVESGLVV-----VAPVRKLGSSAM----AFLRPFTPQMWLIAAASFL-----IV 590

  Fly   424 FTDRLTLSHLMGN------WGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFT 482
            ......|.|...:      ..:|...||:.|.  |..||..     ..|..|..|::: ..|||.
plant   591 GAVIWCLEHKHNDEFRGPPRRQVITTFWFSFS--TLFFSHR-----ETTTSNLGRIVL-IIWLFV 647

  Fly   483 I-IITSCYTGSIIAFVTLPAFPDTVDSVLDLLGLFFRVGTLNNGGWETWFQNSTHIPTSRL---- 542
            : ||.|.||.|:.:.:|:......:..:..|......:|.........:..:..:|..|||    
plant   648 VLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLIHELNIHVSRLVPLR 712

  Fly   543 ----YKKMEFVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSALHLSEEC-- 601
                |.|....|   .|.|.|.       |.:..:|.:|                 |.||..|  
plant   713 SPEEYDKALRDG---PGKGGVA-------AVVDERAYIE-----------------LFLSNRCEF 750

  Fly   602 ------FALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSN 660
                  |.....||.|||.|...:.:.:.||...::|.:.:|.::  |:::::.|   ||.:   
plant   751 GIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDK--WLLRKACS---LQGA--- 807

  Fly   661 SLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSRKSAASSWSSA 725
               ||  |..:|......|:|::..:...|........::.....:|.:..:.|.:..:|  .||
plant   808 ---EI--EVDRLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSS--PSA 865

  Fly   726 SSGSMLRTNAEQLSHDKRKANRREAAE 752
            ...|.|....|:....|.:::|....|
plant   866 RIHSFLSFVKEKEEDAKARSSRERQLE 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 65/322 (20%)
Lig_chan 407..662 CDD:278489 60/277 (22%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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