DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir21a and GLR1.4

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_187408.2 Gene:GLR1.4 / 819940 AraportID:AT3G07520 Length:861 Species:Arabidopsis thaliana


Alignment Length:820 Identity:150/820 - (18%)
Similarity:263/820 - (32%) Gaps:253/820 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FTAQAFSIE--GDRSASYQEKCISRRLINHYQLNKEIFGVGMCDGNNENEFRQKRRIVPTFQGNP 73
            |...|..||  .:.|.|..|:||.::|.........||...:.:......|...||:....:|  
plant   202 FQQNAIHIEYKAEFSVSSNEECIMKQLRKFKASGIRIFVAHISERIANRLFPCARRLGMMEEG-- 264

  Fly    74 RPRGELLASKFHVNSYNFEQTNSLV-----GLVN-----KIAQEYLN---------KCPPVIYYD 119
              ...:|.::   :..||:.||.|.     |::.     .:.:|..|         :...|:...
plant   265 --YAWILTAR---SMNNFQDTNYLAKEEMEGVIGFKSYIPLTEELHNFTLRWKRSLRLEEVVTRM 324

  Fly   120 SF-----------------VEKSDGLILENLFKTIPITFYHGEINADYEAKNKRFTSHIDCNCKS 167
            |.                 |.|..||.:.:|.:.||.:..|..::.|.:..:|:           
plant   325 SVCSIWAHDIAWSLARAAEVAKLPGLSVYDLLEAIPESAKHKGLSGDIKFIDKK----------- 378

  Fly   168 YILFLSDPLMTRKILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNLLVIGESLMADPMRERP 232
               |:||......::| :.|..|.|      |....|:|:.                    |.| 
plant   379 ---FISDKFEIVNMIG-RGERSVGL------WNSGSFISNR--------------------RRR- 412

  Fly   233 YVLYTHKLYADGLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGHRFQISAANQPPFIFRIR 297
                        |.|...:....|..|:...|.|.....|........|..:.|.|..|.|..::
plant   413 ------------LSSTKALETIIWPGGSTRIPKIRSLKEKRHGKKKKLRVLVPAGNITPQILEVK 465

  Fly   298 TLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDITETP-----------------TRSNTRGVVDT 345
            |              :|:  |.::....:.||:.||.                 ...|...:|.|
plant   466 T--------------DFK--TGVTAATGYCIDVFETSILPFNYEVEYIPWPGAINYKNYNDLVYT 514

  Fly   346 IQEQIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCAAFITLASKALPKYRAIMGPFQWPVWVA 410
            :..|  :...|..:..|.||..|.:....::..:....|.:|...|::   ..|..|....:|:.
plant   515 LYSQ--KDKYDAAVGDITITDNRSLYVDFTLPFTDMGLAVVTAKDKSM---WIIFKPLTLSLWLT 574

  Fly   411 LICVYL--GGIFPIVFTDRLTLSHLMGN-WGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTR 472
            :...::  |.|..::  :|...:...|: :.::..:.  .||..|..|:..     ...:.|.:|
plant   575 IASFFILTGAIVWLI--ERHDNADFQGSCFQQIGTLL--CFGFSTLVFAHR-----ERLQHNMSR 630

  Fly   473 LLIGAYWLFTI-IITSCYTGSIIAFVTLPAFPDTVDSVLDLLGL-------FFRVGTLNNGGWET 529
            .:: ..|:|.: |:||.||.::.:.:|          |..:.||       ||......|     
plant   631 FVV-IVWIFAVLILTSNYTATLTSVMT----------VQQIRGLKSNENIGFFSASIAAN----- 679

  Fly   530 WFQNSTHIPTSRLYKKMEFVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSA 594
             ..|.........||.::........:.|.|.||..:        ::.|          :....|
plant   680 -VVNDNPTFQGPRYKGLKTADDFTNALRNGTISFIVD--------EVPY----------VKLFVA 725

  Fly   595 LHLSEECFALFQ-------IGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGR 652
            .|.||  |.:.:       .||.|.:.|....|:...|...:::..:..|.|   |..||.::  
plant   726 KHPSE--FVIVETESVTNGFGFAFQKGSPLVQKVSREIEKLRRTEKLKAIEN---WWFQRQTT-- 783

  Fly   653 LLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSRKS 717
              .|:|.::.       ..||.....|:|::..:.:   |.||:..::                 
plant   784 --SATSEDTF-------HPLTVYTFRGLFMITGVSF---AFALIVYLI----------------- 819

  Fly   718 AASSWSSASSGSMLRTNAEQ----LSHDKRKANRREAAEV 753
               .|           |.||    |.|..|..:.|.|.|:
plant   820 ---PW-----------NREQRQVVLKHFHRYVSHRFAREI 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 56/321 (17%)
Lig_chan 407..662 CDD:278489 51/272 (19%)
GLR1.4NP_187408.2 PBP1_GABAb_receptor 47..410 CDD:107361 47/255 (18%)
ANF_receptor 64..390 CDD:279440 40/208 (19%)
GluR_Plant 448..778 CDD:270404 73/399 (18%)
Periplasmic_Binding_Protein_Type_2 476..>657 CDD:304360 37/205 (18%)
Lig_chan 570..810 CDD:278489 55/299 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.