DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir21a and GLR2.2

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_180048.1 Gene:GLR2.2 / 817008 AraportID:AT2G24720 Length:920 Species:Arabidopsis thaliana


Alignment Length:528 Identity:103/528 - (19%)
Similarity:169/528 - (32%) Gaps:187/528 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 DGLGSNTPVVLTSWIKGALSR--PHINLFPSKFQF-GFAGHRFQISAANQPPFIFRIRTLDSSG- 303
            ||||              ||:  |.:....|..|| |.||. |...:....|.:|.|..:..:| 
plant   347 DGLG--------------LSQFGPKLLQTVSTVQFKGLAGD-FHFVSGQLQPSVFEIVNMIGTGE 396

  Fly   304 ----------------------MGQLR----------WDGVEF-------------RLLTMISKR 323
                                  :|.|.          |.|...             :|...:.||
plant   397 RSIGFWTEGNGLVKKLDQEPRSIGTLSTWPDHLKHIIWPGEAVSVPKGWEIPTNGKKLRIGVPKR 461

  Fly   324 LNFS--IDITETPTRSNT--RG-VVDTIQEQIIERTVDIG--------------------MSGIY 363
            :.|:  :.:|..|..::|  :| .:|..:..|.....|:.                    :..:|
plant   462 IGFTDLVKVTRDPITNSTVVKGFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDLVHQVY 526

  Fly   364 ITQERLMDSAMSVGHSPDCAAFITLASKALPKYRAIMG------------------PFQWPVWV- 409
            :.|   .|:.  ||.:...|...:.....||..::.:|                  |....:|: 
plant   527 LGQ---FDAV--VGDTTILANRSSFVDFTLPFMKSGVGLIVPLKDEVKRDKFSFLKPLSIELWLT 586

  Fly   410 ALICVYLGGIFPIVFTDRLTLSHLM-------GNWGEVENMFWYVFGMFTNA-----FSFTGKYS 462
            .|:..:|.||      ...||.|.:       .|: :...:||:.|.....|     .||     
plant   587 TLVFFFLVGI------SVWTLEHRVNSDFRGPANY-QASTIFWFAFSTMVFAPRERVLSF----- 639

  Fly   463 WSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVLDLL---------GLFFR 518
                   ..|.|:..::...:::|..||.|:.:.:|......|:.|:..||         ...|.
plant   640 -------GARSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITSMSSLLHRGETVGYQRTSFI 697

  Fly   519 VGTLNNGGWETWFQNSTHIP------TSRLYKKMEFVGSVDEGIGNVTQSFFWNYAFLGSKAQLE 577
            :|.||    ||.|..|:.:|      ...|.||    |..:.|:.         .||||:.....
plant   698 LGKLN----ETGFPQSSLVPFDTAEECDELLKK----GPKNGGVA---------AAFLGTPYVRL 745

  Fly   578 YLVQSNFSDENISRRSALHLSEECFALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVS 642
            :|.|         ..:...:.||.|.:...||:||..|.....:...||...:|....::  |.:
plant   746 FLGQ---------YCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAESPKAVEL--EHA 799

  Fly   643 WVMQRSSS 650
            |..::..|
plant   800 WFKKKEQS 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 75/410 (18%)
Lig_chan 407..662 CDD:278489 60/272 (22%)
GLR2.2NP_180048.1 PBP1_GABAb_receptor 33..412 CDD:107361 18/79 (23%)
ANF_receptor 47..392 CDD:279440 17/59 (29%)
HisJ 438..>587 CDD:223904 22/153 (14%)
GluR_Plant 452..801 CDD:270404 79/400 (20%)
Lig_chan 582..819 CDD:278489 60/273 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.