DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and grid1a

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:548 Identity:119/548 - (21%)
Similarity:210/548 - (38%) Gaps:123/548 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 LRDFLSSELSSNIVNLLVIGESLMADPMRERPYVLYTHKLYADGLGSNTPVVLTSW-----IKGA 260
            |.||.|:..:|: |...::|.|                  |::..|.:.. .|.:|     :.|:
Zfish   381 LMDFRSNGANSH-VQFEILGTS------------------YSETFGKDVK-RLATWDSDRGLNGS 425

  Fly   261 LSRPHINLFPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQ-LRWDGVEFRLLTMISKRL 324
            |..       ::...|..|...::....:.||:.....:    :|| .|:.|....:|..::|.|
Zfish   426 LRE-------NRADHGMQGITLKVVTLLEEPFVMVAENI----LGQPKRYKGFSIDVLDALAKIL 479

  Fly   325 NFSIDITET--------PTRSNTRGVVDTIQEQIIERTVDIGMSGIYITQER--LMDSA-----M 374
            .|..::.:.        .|..:..|::.    ::|.:..|:.:|.|.||.||  ::|.:     .
Zfish   480 GFKYEMYQVADAKYGSPQTNGSWNGMIG----ELIGKRADVAISAITITPERENVVDFSKRYLDY 540

  Fly   375 SVGHSPDCAAFITLASKALPKYRAIMGPFQWPVWVALICVYLGGIFPIVFTDRLTLSHLMGN--- 436
            |||      ..:|...:.|..: :::.||...|| |.|...:..:..:||..|...|....|   
Zfish   541 SVG------ILMTKTEERLNIF-SLLAPFDLAVW-ACIAAAIPVVGVMVFLLRRVQSVRSQNPPG 597

  Fly   437 -------WGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSII 494
                   ....::..|.|:|    ||...|..|:.::.  :.|:.:|::||||:|:.|.||.::.
Zfish   598 PHQPASVTTSFQSAIWIVYG----AFVQQGGESFMSSM--ALRIAMGSWWLFTLIVCSSYTANLA 656

  Fly   495 AFVTLPAFPDTVDSVLDL---------------LGLFFRVGTLNNGGWETWFQNSTHIPTSRLYK 544
            |::|:....:.:.:..||               :..:|||     .|.....|:||.....|...
Zfish   657 AYLTVSRMDNAIRTFQDLSKQSEINYGTVRESAVFEYFRV-----KGTNPLEQDSTFAELWRTIN 716

  Fly   545 KME----FVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSALHLSEECFALF 605
            |.:    .|.|..|||..|.:.   .||||...|.|||   :..:|::.:    |.::....:..
Zfish   717 KNQGQDNSVTSPAEGIRKVKRD---PYAFLWDMAVLEY---AALTDDDCT----LVVTGNGMSSK 771

  Fly   606 QIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQEER 670
            ..|......|.|:......||..|:.|.:..:..:  |..::   ||    ...:...|...|.|
Zfish   772 GYGLALQHGSPYRDLFSQKILDLQEKGDLDILKQK--WWPRK---GR----CDLDKHAEPQTEGR 827

  Fly   671 QLTTADTEGMFLLMALGYFLGATALVSE 698
            .|......|:|.::|.|..|.......|
Zfish   828 ALRLHSFAGVFCILAAGLLLACLVAALE 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 81/338 (24%)
Lig_chan 407..662 CDD:278489 65/283 (23%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 12/62 (19%)
PBP2_iGluR_delta_1 437..809 CDD:270448 92/410 (22%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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