DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and Nmdar1

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:1010 Identity:191/1010 - (18%)
Similarity:337/1010 - (33%) Gaps:360/1010 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YWVALVLFTA--------------QAFSIEGDRSASYQEKCISR-------------RLINHYQL 41
            :.:|:||..|              ..::|.|..|.|..|:..|.             |.:.:|..
  Fly    13 FGLAIVLLVAPIDAAQRHTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDK 77

  Fly    42 N--------KEIFGVGMCDGNNENEFRQKRRIVPTFQGNPRPRGEL--LASKFHVNSYNFEQTNS 96
            .        |.:|.|  ||...||      |:......:.:..|:|  .|..:....|:.    .
  Fly    78 TIRMDKNPIKTVFNV--CDKLIEN------RVYAVVVSHEQTSGDLSPAAVSYTSGFYSI----P 130

  Fly    97 LVGLVNK--------IAQEYLNKCPPVIYY---DSFVE----------------KSDGLILENLF 134
            ::|:.::        |...:|...||  ||   |.::|                .:||..:...|
  Fly   131 VIGISSRDAAFSDKNIHVSFLRTVPP--YYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRF 193

  Fly   135 KTIPITFYHG-------EINADYEAKNKRFTSHI----DCNCKSYILFLSDP------------- 175
            :|...|:|..       |:..::|.|.:.||.|:    ....:.|:::.|..             
  Fly   194 QTTSQTYYDDVDVRATVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYN 258

  Fly   176 --------LMTRK----------ILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNLLVIGES 222
                    ::|.:          :||.|.|.     :.|.:..:||  |..:.::.:..::..|:
  Fly   259 MTGEGHVWIVTEQALFSNNTPDGVLGLQLEH-----AHSDKGHIRD--SVYVLASAIKEMISNET 316

  Fly   223 LMADP-------------------MRERPYVLYTHKLYADGLGS---------NTPVVLTSWIKG 259
            :...|                   ::.|.....|.::..|..|.         |........:.|
  Fly   317 IAEAPKDCGDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVG 381

  Fly   260 ALS--------RPHIN----LFPSKFQFGFAG----HRFQISAANQPPFIFRIRTLDSSGMGQLR 308
            ..|        |..||    ::|.|.:....|    ...::....:.||::..|..|.       
  Fly   382 KFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDD------- 439

  Fly   309 WDGVEFR-----------------------------LLTMISKRLNFSIDITETP--------TR 336
                |||                             ||..:|||:||:.|:..:|        .|
  Fly   440 ----EFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILR 500

  Fly   337 SNTRGVVDTIQE------QIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCAAFITLASKALPK 395
            :|| |.:...:|      :::....|:.::.:.|..||              |.:|.. ||.. |
  Fly   501 NNT-GAMTLRKEWTGLIGELVNERADMIVAPLTINPER--------------AEYIEF-SKPF-K 548

  Fly   396 YRAI----------------MGPFQWPVW---------VALICVYLGGIFPIVFTDRLTLSHLMG 435
            |:.|                :.||...:|         |||:...|....|.   .|..|||...
  Fly   549 YQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF---GRFKLSHSDS 610

  Fly   436 NWGEVENM---FWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWL-FTIIITSCYTGSIIAF 496
            |..:..|:   .|:.:|:..|:....|     ..|..|.|:| |..|. |.:||.:.||.::.||
  Fly   611 NEEKALNLSSAVWFAWGVLLNSGIGEG-----TPRSFSARVL-GMVWAGFAMIIVASYTANLAAF 669

  Fly   497 VTLPAFPDTVDSVLDLLGLFFRVGTLNNGGWETWFQNST---------------HIPTSRLYKKM 546
            :.|.. |.|            ::..:|:.......:|.|               .:..|.:|:.|
  Fly   670 LVLER-PKT------------KLSGINDARLRNTMENLTCATVKGSSVDMYFRRQVELSNMYRTM 721

  Fly   547 EF--VGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSALHLSEECFALFQIGF 609
            |.  ..:.::.|.:|.:...  .||:...::|||         ..|:...|..:.|.|.....|.
  Fly   722 EANNYATAEQAIQDVKKGKL--MAFIWDSSRLEY---------EASKDCELVTAGELFGRSGYGI 775

  Fly   610 LFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQE-ERQLT 673
            ...:.|.:...:...||...:||.:.|::.:  |:..    |.:.|..      |:.:: ...|.
  Fly   776 GLQKGSPWTDAVTLAILEFHESGFMEKLDKQ--WIFH----GHVQQNC------ELFEKTPNTLG 828

  Fly   674 TADTEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSR----KSAASSWSSASSGSMLRTN 734
            ..:..|:|:|:.:|...|...::.|::    .|..|:.|:.|    :.||..|    .|::    
  Fly   829 LKNMAGVFILVGVGIAGGVGLIIIEVI----YKKHQVKKQKRLDIARHAADKW----RGTI---- 881

  Fly   735 AEQLSHDKRKANRREAAEVAQKMSFGMRELNLTRA 769
                  :|||..|   |.:|.:..:.: .||.|.|
  Fly   882 ------EKRKTIR---ASLAMQRQYNV-GLNSTHA 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 80/382 (21%)
Lig_chan 407..662 CDD:278489 60/284 (21%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 68/412 (17%)
ANF_receptor 58..371 CDD:279440 52/333 (16%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 94/473 (20%)
HisJ 451..>558 CDD:223904 25/123 (20%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 34/159 (21%)
Lig_chan 575..838 CDD:278489 64/307 (21%)
CaM_bdg_C0 854..882 CDD:287524 8/45 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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