DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir21a and GRIN2C

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:633 Identity:117/633 - (18%)
Similarity:210/633 - (33%) Gaps:187/633 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 FYHGEINADYEAKNKRFTSHIDCNCKSYILFLSDPLMTRKILGPQTESRVVLVSRSTQWRL---- 201
            ||...:|..:|.::..|:..         .:|..|.|.           |:.::|...|.:    
Human   406 FYRHLLNVTWEGRDFSFSPG---------GYLVQPTMV-----------VIALNRHRLWEMVGRW 450

  Fly   202 -RDFLSSELS-----SNIVNLLVIGESLMADPMRERPYVLYTHKLYADGLGSNTPVVLTSWIKGA 260
             ...|..:..     |..:..:|....|....:.|||:|:....  ..|.|...|          
Human   451 EHGVLYMKYPVWPRYSASLQPVVDSRHLTVATLEERPFVIVESP--DPGTGGCVP---------- 503

  Fly   261 LSRPHINLFPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLN 325
                  |..|.:.|   :.|.|  |:.:..|:.            :|...|....:|..:::.:.
Human   504 ------NTVPCRRQ---SNHTF--SSGDVAPYT------------KLCCKGFCIDILKKLARVVK 545

  Fly   326 FSID---ITETPTRSNTRGVVDTIQEQIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCAAFIT 387
            ||.|   :|........|||.:.:..::..:..|:.:..:.|.:||......||.......:.:.
Human   546 FSYDLYLVTNGKHGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMV 610

  Fly   388 LASKALPKYRAIMGPFQWPVWVAL---------ICVYLGGIF-PIVFTDRLTLSHLMGN------ 436
            ..|.......|.:.|:...|||.:         |.|::...| |:.:...||.....|.      
Human   611 ARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQNLTRGKKSGGPAFTIG 675

  Fly   437 ---WGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAFVT 498
               |     :.|        |..|.......|.|..::::::..:..|.:|..:.||.::.||:.
Human   676 KSVW-----LLW--------ALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 727

  Fly   499 LPAFPDTVDSVLDLLGLF----------------------------FRVGTLNNGGWETWFQNS- 534
            ...:.|||..:.|...|.                            ||.||:.||..|...::: 
Human   728 QEQYIDTVSGLSDKKSLHLENTGVAWTAFKTFCSDYFQRPQDQYPPFRFGTVPNGSTERNIRSNY 792

  Fly   535 ----THIPTSRLYKKMEF-VGSVDEGIGNVTQSFFWNYAFLGSKAQ---------------LEYL 579
                ||:        ::| ..||::.:.::.         :||:||               |.|:
Human   793 RDMHTHM--------VKFNQRSVEDALTSLK---------MGSEAQPVPRKLDAFIYDAAVLNYM 840

  Fly   580 VQSNFSDENISRRSALHLSEECFALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWV 644
            ...:...:.::..|.     :.||....|....::|.:|..||..:|.....|...|:  |..| 
Human   841 AGKDEGCKLVTIGSG-----KVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKL--ETVW- 897

  Fly   645 MQRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMF--LLMALGYFL 690
                     |.....|...|::..  :|...:..|:|  ||:|:|..|
Human   898 ---------LSGICQNEKNEVMSS--KLDIDNMAGVFYMLLVAMGLAL 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 65/364 (18%)
Lig_chan 407..662 CDD:278489 60/322 (19%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.