DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir21a and GRIN2B

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_000825.2 Gene:GRIN2B / 2904 HGNCID:4586 Length:1484 Species:Homo sapiens


Alignment Length:579 Identity:108/579 - (18%)
Similarity:199/579 - (34%) Gaps:108/579 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 LLTMISKRLNFSID---ITETPTRSNTRGVVDTIQEQIIERTVDIGMSGIYITQERLMDSAMSVG 377
            :|..|||.:.|:.|   :|.........|..:.:..:::.:...:.:..:.|.:||......||.
Human   464 ILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVP 528

  Fly   378 HSPDCAAFITLASKALPKYRAIMGPFQWPVW----VALICVYLGGIFPIVFTDRLTLSHLMGNWG 438
            ......:.:...|.......|.:.||...||    |.|:.|....:|...:...:..:..:.:..
Human   529 FIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGR 593

  Fly   439 E-------VENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAF 496
            |       :....|.::|:.     |.......|.:..::::::..:..|.:|..:.||.::.||
Human   594 EPGGPSFTIGKAIWLLWGLV-----FNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAF 653

  Fly   497 VTLPAFPDTVDSVLDL-------LGLFFRVGTLNNGGWETWFQNSTHIPTSRLYKKME-FVGSVD 553
            :....:.|.|..:.|.       ....||.||:.||..|...:|:        |.:|. ::|..:
Human   654 MIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRNN--------YAEMHAYMGKFN 710

  Fly   554 E-GIGNVTQSFFWNY--AFLGSKAQLEYLVQSNFSDENISRRSALHL----SEECFALFQIGFLF 611
            : |:.:...|.....  ||:...|.|.|:.         .|.....|    |.:.||....|...
Human   711 QRGVDDALLSLKTGKLDAFIYDAAVLNYMA---------GRDEGCKLVTIGSGKVFASTGYGIAI 766

  Fly   612 PRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQEERQLTTAD 676
            .::|.:|.::|..||.....|.:.::  |..|          |.....|...|::..  ||...:
Human   767 QKDSGWKRQVDLAILQLFGDGEMEEL--EALW----------LTGICHNEKNEVMSS--QLDIDN 817

  Fly   677 TEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSRKSAASSWSSASSGSMLRTN------A 735
            ..|:|      |.|||...:|.    ||..|..:.....:.......|...|.:...:      .
Human   818 MAGVF------YMLGAAMALSL----ITFICEHLFYWQFRHCFMGVCSGKPGMVFSISRGIYSCI 872

  Fly   736 EQLSHDKRKANRREAAEVAQKMSFGMRELNLTRATLREIYGSYGAPETDHGQLDIVHTE------ 794
            ..::.::|::...............:..|..|...:..:.|..|:|::   .||.:..|      
Human   873 HGVAIEERQSVMNSPTATMNNTHSNILRLLRTAKNMANLSGVNGSPQS---ALDFIRRESSVYDI 934

  Fly   795 ------FPNSSAK-LNNIEDEES---------REALESLQRLDE--FMDQMDNDGNPSS 835
                  |.:|..| .||...||:         .....:||..|.  :.|...:...|.|
Human   935 SEHRRSFTHSDCKSYNNPPCEENLFSDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHS 993

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 55/291 (19%)
Lig_chan 407..662 CDD:278489 54/280 (19%)
GRIN2BNP_000825.2 PBP1_iGluR_NMDA_NR2 33..393 CDD:107373
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 70/372 (19%)
HisJ <459..>542 CDD:223904 13/77 (17%)
Lig_chan 557..829 CDD:278489 63/313 (20%)
Pore-forming. /evidence=ECO:0000250|UniProtKB:A7XY94 604..623 3/23 (13%)