DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and Grin2a

DIOPT Version :10

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_036705.3 Gene:Grin2a / 24409 RGDID:2737 Length:1464 Species:Rattus norvegicus


Alignment Length:791 Identity:141/791 - (17%)
Similarity:266/791 - (33%) Gaps:214/791 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 IVPTF-QGN----PR--PRGELLASKFHVNSYNFE-QTNSLVGLVNKIAQEYLNKCPPVIYYDSF 121
            |||:. .||    |:  |.| |::..:....|:.| :....:|::...|...|.|.       |:
  Rat   256 IVPSLVSGNTELIPKEFPSG-LISVSYDDWDYSLEARVRDGLGILTTAASSMLEKF-------SY 312

  Fly   122 VEKSDGLILENLFK-TIPI-TFYHGEINADYEAKNKRFTSHIDCNCKSYILFLSDPLMTRKILGP 184
            :.::.........| ..|: |.:...:|..::.|:..||..                      |.
  Rat   313 IPEAKASCYGQAEKPETPLHTLHQFMVNVTWDGKDLSFTEE----------------------GY 355

  Fly   185 QTESR--VVLVSRSTQW-------------------RLRDFLSSELSSNIVNLLVIGESLMADPM 228
            |...|  |:::::..:|                   |.:.|...|...|.::::.         :
  Rat   356 QVHPRLVVIVLNKDREWEKVGKWENQTLSLRHAVWPRYKSFSDCEPDDNHLSIVT---------L 411

  Fly   229 RERPYVLYTHKLYADGLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGHRFQISAANQPPFI 293
            .|.|:|:      .:.:...|...:.            |..|.:                  .|:
  Rat   412 EEAPFVI------VEDIDPLTETCVR------------NTVPCR------------------KFV 440

  Fly   294 FRIRTLDSSGMGQLR-WDGVEFRLLTMISKRLNFSIDITETPTRSNTRGVVDT----IQEQIIER 353
             :|....:.||...: ..|....:|..:|:.:.|:.|:.......:.:.|.:.    |.|.:.:|
  Rat   441 -KINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQR 504

  Fly   354 TVDIGMSGIYITQERLMDSAMSVGHSPDCAAFITLASKALPKYRAIMGPFQWPVWVAL------- 411
            .| :.:..:.|.:||......||.......:.:...|.......|.:.||...|||.:       
  Rat   505 AV-MAVGSLTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLIV 568

  Fly   412 --ICVYLGGIF-PIVFTDRLT---LSHLMGNWGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNS 470
              |.|::...| |:.:...|.   ..|  |....:....|.::|:.     |.......|.:..:
  Rat   569 SAIAVFVFEYFSPVGYNRNLAKGKAPH--GPSFTIGKAIWLLWGLV-----FNNSVPVQNPKGTT 626

  Fly   471 TRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVLDLLGLF---------FRVGTLNNGG 526
            :::::..:..|.:|..:.||.::.||:....|.|.|..:.|  ..|         ||.||:.||.
  Rat   627 SKIMVSVWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSD--KKFQRPHDYSPPFRFGTVPNGS 689

  Fly   527 WETWFQNSTHIPTSRLYKKMEFVGSVDEGIGNV----TQSFFWNYAFLGSKAQLEYLVQSNFSDE 587
            .|...:|  :.|....|........|::.:.::    ..:|.::.|.|..||             
  Rat   690 TERNIRN--NYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKA------------- 739

  Fly   588 NISRRSALHL----SEECFALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRS 648
              .|.....|    |...||....|....:.|.:|.:||..:|.....|.:.::  |..|     
  Rat   740 --GRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEEL--ETLW----- 795

  Fly   649 SSGRLLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGA-----------------TALV 696
                 |.....|...|::..  ||...:..|:|.::|....|..                 |.:.
  Rat   796 -----LTGICHNEKNEVMSS--QLDIDNMAGVFYMLAAAMALSLITFIWEHLFYWKLRFCFTGVC 853

  Fly   697 SEIVGGITNKCRQI--------IKRSRKSAASSWSSASSGSM-LRTNAEQLS-----HDKRKANR 747
            |:..|.:.:..|.|        |:..:||...:.:.:.|..: |..:|:.:|     :..|..:.
  Rat   854 SDRPGLLFSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISNMSNMNSSRMDSP 918

  Fly   748 REAAEVAQKMS 758
            :.|.:..|:.|
  Rat   919 KRATDFIQRGS 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 HisJ 287..>392 CDD:440596 20/109 (18%)
Lig_chan 405..662 CDD:459656 57/286 (20%)
Grin2aNP_036705.3 PBP1_iGluR_NMDA_NR2 32..387 CDD:380601 28/160 (18%)
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 86/483 (18%)
Pore-forming. /evidence=ECO:0000250|UniProtKB:B7ZSK1 599..620 3/25 (12%)
NMDAR2_C 839..1464 CDD:463148 16/91 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1083
PDZ-binding. /evidence=ECO:0000305 1462..1464
Blue background indicates that the domain is not in the aligned region.

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