DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and glr-6

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:662 Identity:138/662 - (20%)
Similarity:251/662 - (37%) Gaps:147/662 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NSLVGLVNKIAQEYLNKCP--PVIYYDSFVEKSDGLILENLFKTIPITFYHGEINADYEAKNKRF 157
            |.|...:..:.||||.|.|  |...:..|....|.::|.                  .:|.::|.
 Worm   274 NDLAIKLPDMYQEYLAKIPSNPRTPFKDFAFIFDSILLA------------------CQAGDRRI 320

  Fly   158 TSHIDCN----CKSYILFLSDPL--MTRKILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNL 216
               |.|.    .|.:.|.:..|.  :|.||....|..|                 |:...:|..:
 Worm   321 ---ISCGDNEAVKKFKLPIVKPFKGLTGKISFNGTSDR-----------------SDSELHIWEM 365

  Fly   217 LVIGESLMADPMRERPYVLYTHKLYADGLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGHR 281
            .:.|..            |:|....:...||....:|...|.|.......::..|:        .
 Worm   366 GITGAG------------LHTGIWKSTWEGSKELTMLAKNIPGTHEHYQASVRESR--------T 410

  Fly   282 FQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDI-----TETPTRSNTRG 341
            .::::.::.|::......|    |:::.:|....||..:::.|:|:..:     .:...|.|...
 Worm   411 LKVTSIHEKPYVIEKIMPD----GRIKHEGFCVDLLDKLAEMLHFNYTLKIVKDNKYGERKNGTD 471

  Fly   342 VVDTIQEQIIERTVDIGMSGIYITQERL-----MDSAMSVGHSPDCAAFITLASKALPKYRAIMG 401
            ..|.:..:|:....|:.::.|.:|..||     .|..:.:|.|       .|..:..||..:.:.
 Worm   472 EWDGMIGEILRGDADMAVAPITVTATRLEVIDFTDPFLQLGIS-------MLMRQPNPKSSSSLT 529

  Fly   402 PFQWP----VW----VALICVYLGGIFPIVFTDRLTLSHLMGNWGEVENMFWYVFGMFTNAFSFT 458
            .|.||    ||    :|.:...|......|.:.:.:.:..     :::|..||:..:...|    
 Worm   530 RFLWPLSASVWTFSAIATVITALLVTVAAVLSPKESTAEF-----KIQNSVWYLVCILLRA---- 585

  Fly   459 GKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVLDLLG--LFFRVGT 521
              .|..|.:..:|||:...:|.||:::.:.||.:..|.:|:.......:| .:.||  ..:..|:
 Worm   586 --GSGYNCQAGATRLISAVWWSFTLVLIAQYTANFAALLTVDRKSMPFNS-FEELGNQTEYNFGS 647

  Fly   522 LNNGGWETWFQNSTHIPTSRLYKKME------FVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLV 580
            :..|....:|:.|......||:::|:      |||:..||:..|...   .|.||...|.|:|.|
 Worm   648 ILGGSTMQFFKYSRIETFRRLWERMQSAEPSAFVGTNHEGVNRVLNE---KYVFLMESATLDYQV 709

  Fly   581 QSNFSDENISRRSALHLSEECFALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVM 645
            ..|.   |::|...:.|....:::     ..|:.|.::.|:...||...:.|:|..:.|  :|  
 Worm   710 TQNC---NLTRVGNVVLGSNGYSI-----ALPKGSKWREKLTRQILDLNEKGIILMLKN--NW-- 762

  Fly   646 QRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIV---------- 700
             ...|.:..|:|....|:..:..|      :..|:|||:|||..:|....|.|..          
 Worm   763 -WKKSQQECQSSEPEDLQTALGAE------NVYGLFLLLALGSGIGVLCAVLEHTHFIFFEKNKR 820

  Fly   701 GGITNKCRQIIK 712
            .|.|.|.:|:|:
 Worm   821 NGQTPKLQQMIE 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 70/319 (22%)
Lig_chan 407..662 CDD:278489 60/266 (23%)
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591 32/169 (19%)
PBP2_iGluR_Kainate 409..764 CDD:270432 83/401 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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