DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and Grik2

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:779 Identity:161/779 - (20%)
Similarity:269/779 - (34%) Gaps:216/779 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 VNSYNFEQTNS----LVGLVNKIAQEYLNKCPPVIYYDSFVEKSDGLILENLFKTIPITFYHG-- 144
            ||...|...|:    :..::.|.:.|.| :.||         |.|..:|:....|.....|..  
Mouse   274 VNMTGFRILNTENTQVSSIIEKWSMERL-QAPP---------KPDSGLLDGFMTTDAALMYDAVH 328

  Fly   145 EINADYEAKNKRFTSHIDCNCKSYILFLSDPLMTRKILGPQTESRVVLVSRSTQWRLRDFLSSEL 209
            .::...:...:...|.:.||......|               .:|.:.:.:...|   :.|:..:
Mouse   329 VVSVAVQQFPQMTVSSLQCNRHKPWRF---------------GTRFMSLIKEAHW---EGLTGRI 375

  Fly   210 SSNIVNLLVIGESLMADPMRERPYVLYTHKLYADGL---GSNTP---VVLTSWIKGALSRPHINL 268
            :.|..|      .|..|      :.|....|..:||   |:..|   :.:|...||.        
Mouse   376 TFNKTN------GLRTD------FDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGK-------- 420

  Fly   269 FPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDIT-- 331
             |:......:.....::...:.|::. .:..|....|..|::|....||..:|..|.|:.:|.  
Mouse   421 -PANITDSLSNRSLIVTTILEEPYVL-FKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLV 483

  Fly   332 ---ETPTRSNTRGVVDTIQEQIIERTVDIGMSGIYIT--QERLMDSAMSVGHSPDCAAFITLASK 391
               :...:.:..|..:.:..::|:...|:.::.:.||  :|:::|.:         ..|:||...
Mouse   484 EDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFS---------KPFMTLGIS 539

  Fly   392 AL--------PKYRAIMGPFQWPVWVALICVYLG---GIFPIVFTDR------------------ 427
            .|        |...:.:.|....:|:.::..|||   .:|.|....:                  
Mouse   540 ILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARQSKFSWFKYPNCSHYHHSQRC 604

  Fly   428 LTLSHLMG----------NW----------GEVE------NMFWYVFGMFTNAFSFTGKYSWSNT 466
            |...||..          .|          ..||      |.||:..|      :...:.|....
Mouse   605 LCTQHLESYMELCLFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVG------ALMQQGSELMP 663

  Fly   467 RKNSTRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVLDLL-GLFFRVGTLNNGGWETW 530
            :..|||::.|.:|.||:||.|.||.::.||:|:......:||..||. ......|.:.:|...|:
Mouse   664 KALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTF 728

  Fly   531 FQNSTHIPTSRLYKKM----------EFVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFS 585
            |:.| .|.|   |.||          ..|.|.:|||..|..|   :||||.....:|::.|.|.:
Mouse   729 FKKS-KIST---YDKMWAFMSSRRQSVLVKSNEEGIQRVLTS---DYAFLMESTTIEFVTQRNCN 786

  Fly   586 DENISRRSALHLSEECFALFQIGFLF---------PRESVYKIKIDSMILLAQQSGLIAKINNEV 641
                              |.|||.|.         |..|.|:.||...||..|:.|.: .:..|.
Mouse   787 ------------------LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKL-HMMKEK 832

  Fly   642 SWVMQRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIVGGITNK 706
            .|             ..:....|..:|...|...:..|:|:::|.|..|.....|.|.:.. :.|
Mouse   833 WW-------------RGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYK-SKK 883

  Fly   707 CRQIIKRSRKSAASSWSSASSGSMLRTNAEQLSHDKRKANRREA------AEVAQKMSFGMREL 764
            ..|:.|||..||           |:......|...:|..::.:|      .||....:|..|.|
Mouse   884 NAQLEKRSFCSA-----------MVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRL 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 83/366 (23%)
Lig_chan 407..662 CDD:278489 76/321 (24%)
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 31/179 (17%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 100/459 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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