DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir21a and GRIN3B

DIOPT Version :9

Sequence 1:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:498 Identity:102/498 - (20%)
Similarity:176/498 - (35%) Gaps:105/498 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 ANQPPFIFRIRTLDSSGMGQL---RWDGVEFRLLTMISKRLNFSIDITETPTRSNTRGVVDTIQE 348
            |...||.|.:..:.....|.|   ||.|:...||   :.|.:.::          |...:::.:.
Human   488 AEDTPFDFELYLVGDGKYGALRDGRWTGLVGDLL---AGRAHMAV----------TSFSINSARS 539

  Fly   349 QIIERTVDIGMSGIYITQERLMDSAMSVGHSPDCAAFITLASKALPKYRAIMGPFQWPVWVALI- 412
            |:::.|.....:.:.| ..|..|:|..:|                    |.|.|..|..|:.:. 
Human   540 QVVDFTSPFFSTSLGI-MVRARDTASPIG--------------------AFMWPLHWSTWLGVFA 583

  Fly   413 CVYLGGIF--------PIVFTDRLTLSHLMGNWGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKN 469
            .::|..:|        |...|.|......:.::....|:.:.:  :|....|       |.|.|.
Human   584 ALHLTALFLTVYEWRSPYGLTPRGRNRSTVFSYSSALNLCYAI--LFRRTVS-------SKTPKC 639

  Fly   470 ST-RLLIGAYWLFTIIITSCYTGSIIAFV----TLPAFPDTVDSVLDLLGLFFRVGTLNNGGWET 529
            .| |||:..:.:|.:::.|.||.::.|.:    |........|..|......||.||:.....|.
Human   640 PTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPAQGFRFGTVWESSAEA 704

  Fly   530 WFQNSTHIPTSRLYKKMEFVGSVDEGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSA 594
            :.:.|  .|....:.:.....:...|:..:|.......||:..|:.|:|.|.             
Human   705 YIKKS--FPDMHAHMRRHSAPTTPRGVAMLTSDPPKLNAFIMDKSLLDYEVS------------- 754

  Fly   595 LHLSEEC--------FALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSG 651
              :..:|        ||:...|...|:.|.....:...|...:.||.|..::::  |........
Human   755 --IDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDK--WYKMVPCGK 815

  Fly   652 RLLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIVGGITNKCRQIIKRSRK 716
            |:.          .:.|..|::.....|:|:|:.||  || :||:|.:  |.....|..:.|.||
Human   816 RVF----------AVTETLQMSIYHFAGLFVLLCLG--LG-SALLSSL--GEHAFFRLALPRIRK 865

  Fly   717 -SAASSWSSASSGSMLRTNAEQLSHDKRKANRREAA--EVAQK 756
             |....|...|.......|.|.....|.:....|.:  ||.|:
Human   866 GSRLQYWLHTSQKIHRALNTEPPEGSKEETAEAEPSGPEVEQQ 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 62/310 (20%)
Lig_chan 407..662 CDD:278489 51/276 (18%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 73/381 (19%)
Lig_chan 576..842 CDD:278489 58/305 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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