DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)gl and AT5G05570

DIOPT Version :9

Sequence 1:NP_001245801.1 Gene:l(2)gl / 33156 FlyBaseID:FBgn0002121 Length:1161 Species:Drosophila melanogaster
Sequence 2:NP_196176.1 Gene:AT5G05570 / 830440 AraportID:AT5G05570 Length:1124 Species:Arabidopsis thaliana


Alignment Length:597 Identity:121/597 - (20%)
Similarity:210/597 - (35%) Gaps:178/597 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRI 97
            |.|...|.||:||:..|:|:||..|.:||.|...:|      .:..|..:|..:.||::...|.:
plant    42 GIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIE------AILASPKQLPFKNLEFMQNQGFL 100

  Fly    98 LSLTAANQLILWEPVGATLL----PIKTLPFDGKLKKVSSLCCSLSKDLLWIGTE---------- 148
            :|::..|::.:|:      |    |..:|.::   ..:::.........:::|.|          
plant   101 VSISNENEIQVWD------LDLRQPASSLKWE---SNITAFAILHGTGYMYVGDEYGMVSVLNYS 156

  Fly   149 --GGNIYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVL 211
              .|.:.||..:..|        |.:.|....:..::...:..:.|..:..::||:|::.||..|
plant   157 ADEGKLLQLPYYVPT--------DALSEAAGLSSPIDYPVVGLLSQPCSKGTRLLIAFSNGLLFL 213

  Fly   212 WDFESASVQRAYIAPGH------GQSVG----------LTVNFEGSEFT---WYHADGSYAT--- 254
            ||   ||.....:..|:      |::|.          ..:..:|.|.:   |...|||...   
plant   214 WD---ASEDHVVLVRGNKDLPVEGKTVADSLEASHDELSNLELDGKEISSLCWASTDGSVLAVGY 275

  Fly   255 -------WSIDNPE--PPSN---------------VNYVPYGPDPCKSINRLYKGKR-------- 287
                   |...:.:  .|||               |..:.:    |..::|...|.:        
plant   276 VDGDILFWDFSDGQKGKPSNHVVKLQLSSAEKRLPVIVMHW----CLDVSRKSSGGKLFIYGGDI 336

  Fly   288 -RSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVT-FENNRDVAEVLVVLLE 350
             .|::|:...|....|..|...||.       :..|..:....|..:: ..::|.....|.:|..
plant   337 IGSDEVLTMLGLDWSSGMGGLKCVG-------RADLTLSGSFADMVLSPIASSRQSGVFLFLLTN 394

  Fly   351 E-ELCAYDLTD-------------------PNICAIKAPYLHSVHASAVTCN----YLASEVVQS 391
            . :|.|||.|.                   |.:.....|::.....||:..|    ...||:|.:
plant   395 PGQLQAYDDTSLASLMSQKENKISVSPLPYPMVVPTMDPHMTVATFSALNVNDKTSLALSEIVLA 459

  Fly   392 VYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVL 456
            .     :|...:.....:..||:||| :|.::      |..||..:.:.|::|||::.||.|...
plant   460 A-----KARTPRTPSGESAQWPLTGG-VPSHV------DDYKLERLYMAGYQDGSMRIWDATYPC 512

  Fly   457 LKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKT 521
            |..||      |...::...|....|.|                           |....||.||
plant   513 LSLIY------ILEPKASVIDITGVDAS---------------------------VTAFCFCSKT 544

  Fly   522 GQLIVGGTAGQI 533
            ..|.||...|.:
plant   545 SCLAVGNECGMV 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)glNP_001245801.1 WD40 repeat 39..78 CDD:293791 14/38 (37%)
WD40 repeat 84..126 CDD:293791 9/45 (20%)
WD40 repeat 131..174 CDD:293791 7/54 (13%)
WD40 repeat 188..224 CDD:293791 11/35 (31%)
LLGL 268..>338 CDD:285555 12/79 (15%)
AT5G05570NP_196176.1 WD40 repeat 88..114 CDD:293791 6/31 (19%)
WD40 repeat 121..181 CDD:293791 9/70 (13%)
WD40 repeat 188..225 CDD:293791 11/39 (28%)
WD40 repeat 258..283 CDD:293791 4/24 (17%)
R-SNARE_STXBP5_6 1060..1117 CDD:277226
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1983
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122541at2759
OrthoFinder 1 1.000 - - FOG0000702
OrthoInspector 1 1.000 - - mtm958
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10241
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X453
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.920

Return to query results.
Submit another query.