DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HSPB1 and Hspb1

DIOPT Version :10

Sequence 1:NP_001531.1 Gene:HSPB1 / 3315 HGNCID:5246 Length:205 Species:Homo sapiens
Sequence 2:NP_114176.4 Gene:Hspb1 / 24471 RGDID:61306 Length:206 Species:Rattus norvegicus


Alignment Length:209 Identity:171/209 - (81%)
Similarity:186/209 - (88%) Gaps:7/209 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     1 MTERRVPFSLLRGPSWDPFRDWYP-HSRLFDQAFGLPRLPEEWSQWLGGSSWPGYVRPLPPAAIE 64
            ||||||||||||.|||:||||||| ||||||||||:||.|:|||||...:.|||||||||.|..|
  Rat     1 MTERRVPFSLLRSPSWEPFRDWYPAHSRLFDQAFGVPRFPDEWSQWFSSAGWPGYVRPLPAATAE 65

Human    65 SPA---VAAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEE 126
            .||   :||||:||||:|||||||||||.||||||||||||||||:|||||||:|||||||||||
  Rat    66 GPAAVTLAAPAFSRALNRQLSSGVSEIRQTADRWRVSLDVNHFAPEELTVKTKEGVVEITGKHEE 130

Human   127 RQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMPKLATQSNEITIPVTFESRAQL 191
            |||||||||||||||||||||||||.||||||||||||||||:||..|||.|||||||||:|||:
  Rat   131 RQDEHGYISRCFTRKYTLPPGVDPTLVSSSLSPEGTLTVEAPLPKAVTQSAEITIPVTFEARAQI 195

Human   192 GGPEAAKSDETAAK 205
            ||||   |:::.||
  Rat   196 GGPE---SEQSGAK 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HSPB1NP_001531.1 Interaction with TGFB1I1. /evidence=ECO:0000250 70..205 115/134 (86%)
ACD_HspB1_like 84..169 CDD:107230 80/84 (95%)
Hspb1NP_114176.4 Interaction with TGFB1I1. /evidence=ECO:0000269|PubMed:11546764 74..206 115/134 (86%)
ACD_HspB1_like 88..173 CDD:107230 80/84 (95%)

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