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Protein Alignment Cda4 and Chit1

DIOPT Version :9

Sequence 1:	NP_728468.1	Gene:	Cda4 / 33144	FlyBaseID:	FBgn0052499	Length:	486	Species:	Drosophila melanogaster
Sequence 2:	NP_001271454.1	Gene:	Chit1 / 71884	MGIID:	1919134	Length:	464	Species:	Mus musculus

Alignment Length:	465	Identity:	85/465 - (18%)
Similarity:	143/465 - (30%)	Gaps:	176/465 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly   121 PGDLEPEKIPQIIMLTFDGAVN--LNNYQH-----YQKIFDGKRKNP---NGCLIRGTFFMSHEY 175
            |.|::|.....:| ..|.|..|  |:..:|     ||::...|.|||   ....:.|..|.:.::
Mouse    43 PRDVDPNLCTHVI-FAFAGMDNHQLSTVEHNDELLYQELNSLKTKNPKLKTLLAVGGWTFGTQKF 106

  Fly   176 -------SNYQQ--------IQHLGYYGHEIG--------------------------------- 192
                   ||.|.        ::..|:.|.::.
Mouse   107 TDMVATASNRQTFVKSALSFLRTQGFDGLDLDWEFPGGRGSPTVDKERFTALIQDLAKAFQEEAQ 171

  Fly   193 ---------TESISQQQGLQDKGYE-EWVGEMIGMREILRHFANVSVNDVVGMRAPFLK----PG 243
                     |.::...:||.|.||| :.:.:.:....::.:..:.|:....|..:|..|    .|
Mouse   172 SSGKERLLLTAAVPSDRGLVDAGYEVDKIAQSLDFINLMAYDFHSSLEKTTGHNSPLYKRQGESG 236

  Fly   244 RNTQYKVLEDFGYIYDSSITVPPVPVPVW---------------PYTLDYKISHECKSGTCPSRT 293
            ...:..|        |:::|       :|               .|...:.::....:|.....|
Mouse   237 AAAEQNV--------DAAVT-------LWLQKGTPASKLILGMPTYGRSFTLASSSDNGVGAPAT 286

  Fly   294 FPGVWEVPLNTHYVEGYEGGHCPYLDQC---VLHNLDEEEV------FQWLQEDFSRYYEQNKAP 349
            .||.     ...|.:  :.|...|.:.|   ..|.:::::|      .||:..|....::. ||.
Mouse   287 GPGA-----PGPYTK--DKGVLAYYEACSWKERHRIEDQKVPYAFQDNQWVSFDDVESFKA-KAA 343

  Fly   350 YMMPFHTNWFQTKPLENGLHKFLDWALELPDV-----------YILTVTQMLQYVTDPKEL-RDV 402
            |:.            :.||...:.|.|:|.|.           .|.|:.|.|..   |.|. |..
Mouse   344 YLK------------QKGLGGAMVWVLDLDDFKGSFCNQGPYPLIRTLRQELNL---PSETPRSP 393

  Fly   403 SQIESWKCDKSVSVAPKPCNIWQTCALPFKIPEQNLTDTRYMETCR-ECPNVYPWLGDAGGTGIA 466
            .||           .|:|        .|..:|||. ........|: :...|||..||
Mouse   394 EQI-----------IPEP--------RPSSMPEQG-PSPGLDNFCQGKADGVYPNPGD------- 431

  Fly   467 GRDNYIFAGG 476
             ...|...||
Mouse   432 -ESTYYNCGG 440

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.