DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cda4 and chil-1

DIOPT Version :10

Sequence 1:NP_728468.1 Gene:Cda4 / 33144 FlyBaseID:FBgn0052499 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_001040740.1 Gene:chil-1 / 182430 WormBaseID:WBGene00007465 Length:465 Species:Caenorhabditis elegans


Alignment Length:181 Identity:35/181 - (19%)
Similarity:67/181 - (37%) Gaps:48/181 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 SRTFPG-VWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSRYYEQNKAPYMMPF 354
            ||:|.| |:.....|.:|...    ..::::   :::|..|:| |:   :.||.::|.  |:|..
 Worm   191 SRSFSGLVFNETSRTVFVNSI----VSFVEK---YDIDGIEMF-WM---WPRYRDKNN--YLMFI 242

  Fly   355 HTNWFQTKPLENGLHKFLDWALEL------------------PDVYILTVTQMLQYVTDPKE--- 398
            ....:....|:|.|::..|:.:.|                  .|.:.:.:.....|...|..   
 Worm   243 QELRYAFTELQNKLNRKEDFVISLVASSNLNLLFNLVEFLNSVDFFGIYLFNSYSYQVGPDSPLY 307

  Fly   399 ---LRDVSQIESWKCDKSVSVAPKPCNI--------WQTCALPFKIPEQNL 438
               .|:|.:|..:...|:..  |...||        |:...||.:....|:
 Worm   308 GGGSRNVDEIMKYYICKTGQ--PSKFNIIISFHATYWEGTDLPLRDDSDNI 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cda4NP_728468.1 CBM_14 33..80 CDD:426342
CE4_CDA_like_1 130..396 CDD:200596 23/123 (19%)
chil-1NP_001040740.1 Glyco_18 118..436 CDD:214753 35/181 (19%)
Blue background indicates that the domain is not in the aligned region.

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