DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cda4 and chil-13

DIOPT Version :9

Sequence 1:NP_728468.1 Gene:Cda4 / 33144 FlyBaseID:FBgn0052499 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_496018.2 Gene:chil-13 / 174500 WormBaseID:WBGene00010945 Length:439 Species:Caenorhabditis elegans


Alignment Length:216 Identity:39/216 - (18%)
Similarity:64/216 - (29%) Gaps:94/216 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 SITVPPVPVPVWP-----------------YTLDYKISHECKSGTCPSRTFPGVWEVPLNTHYVE 308
            |:|||...|..|.                 |::||            :..:|..|.||       
 Worm   223 SMTVPAAGVDNWELGFDLEELQNHVDFFNVYSMDY------------AGPWPNQWGVP------- 268

  Fly   309 GYEGGHCPYLDQCVLHNLDEEEVF--QWLQEDFSRYYEQNKAPYMM----PF------------- 354
              .|...|     :.:|:...:.|  .|..:   .|..:.|.|.|:    ||             
 Worm   269 --TGPSSP-----MFYNIGARKNFYVDWTMK---HYTCKLKQPSMLNMVIPFSARIWNNVQEAID 323

  Fly   355 -HTNWFQTKPLENGL-------------HKFLD-------------WALELPDVYILTV--TQML 390
             .|..|:...|:|.:             |:.|:             :.|:|.....||.  .:.:
 Worm   324 NRTEVFRNAELKNNMAEGRTQISRWTAEHEGLELSPSSWDNLTMTPYILDLKAKTFLTFEDKRSI 388

  Fly   391 QYVTDPKELRDVSQIESWKCD 411
            :..||..:..|:..:..|..|
 Worm   389 KIKTDYAKKMDLGGVWLWSVD 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cda4NP_728468.1 CBM_14 33..80 CDD:279884
CE4_CDA_like_1 130..396 CDD:200596 35/199 (18%)
chil-13NP_496018.2 Glyco_18 81..411 CDD:214753 39/216 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164250
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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