DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cda4 and chil-24

DIOPT Version :9

Sequence 1:NP_728468.1 Gene:Cda4 / 33144 FlyBaseID:FBgn0052499 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_494455.1 Gene:chil-24 / 173661 WormBaseID:WBGene00020407 Length:410 Species:Caenorhabditis elegans


Alignment Length:412 Identity:84/412 - (20%)
Similarity:117/412 - (28%) Gaps:154/412 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 TFFMSHEYSNYQQIQH---------LGYYGHEIGTESISQQ------------------------ 199
            |||..|  |||:...:         :|:|.....|:..|.|                        
 Worm    34 TFFSIH--SNYKMSNNETETTPSRIVGFYADWERTDITSHQVAKLTHAVFAYVQMKFDGSLGFKN 96

  Fly   200 -------QGLQDK---GYEEWVGEM--IGMREILRHFANVSVNDVVGMRAPFL------------ 240
                   ..|:||   ..:..|..|  ||..|..:||..|..|  |.|:..||            
 Worm    97 DAARIRFSNLRDKVRRNEDSNVKMMISIGGFENSQHFYPVLSN--VEMKKAFLNSISSFLAYHEL 159

  Fly   241 ----------KPGRNTQY-KVLED----FGYIYDSSITVPPVPVPVWPYTLDYK-ISHECKSGTC 289
                      .|.....| :.|.|    .||.:..|:.||...|.......|.: ||........
 Worm   160 HGVDIFWKWPSPEDKAHYSRFLADLRQHLGYEFIISVAVPQAEVSNLELGYDLRTISSHVDFFNV 224

  Fly   290 PSRTFPGVWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSRYY-----EQNKAP 349
            .|..:.|.|....      |...|....|.....||:|      |.    .|||     |..|..
 Worm   225 HSMDYYGPWPNEW------GKPTGPISPLYGPTRHNVD------WT----LRYYAEKTGEPGKLN 273

  Fly   350 YMMPFHTNWFQT--KPLENGLHKFLDWALELPDVYILTVTQMLQYVTDPKEL------------- 399
            .::||....::.  :|:|.|...|.|  :||.|........|.::....:||             
 Worm   274 MVIPFFVRLWKNVPEPVEPGRQVFRD--VELVDNKPQGEAYMSRWSAQHEELDLSPADWDEETRS 336

  Fly   400 -----RDVSQIESWKCDKSVSVAPKPCNIWQTCALPFKIPEQNLTDTRYMETCRECPNVYPWLGD 459
                 .|.....:::.|||:....|            .:.|:||            ..|:.|..|
 Worm   337 SYTWNPDTRNFVTFETDKSIQEKMK------------YVKEKNL------------GGVWIWHVD 377

  Fly   460 AG----------GTGIAGRDNY 471
            |.          |.|:.....|
 Worm   378 ANEKLLDSVRFDGEGVVDDQEY 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cda4NP_728468.1 CBM_14 33..80 CDD:279884
CE4_CDA_like_1 130..396 CDD:200596 67/307 (22%)
chil-24NP_494455.1 Glyco_18 55..378 CDD:214753 72/366 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164240
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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