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Protein Alignment Cda4 and Chil1

DIOPT Version :9

Sequence 1:	NP_728468.1	Gene:	Cda4 / 33144	FlyBaseID:	FBgn0052499	Length:	486	Species:	Drosophila melanogaster
Sequence 2:	NP_031721.2	Gene:	Chil1 / 12654	MGIID:	1340899	Length:	389	Species:	Mus musculus

Alignment Length:	365	Identity:	64/365 - (17%)
Similarity:	116/365 - (31%)	Gaps:	118/365 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly   117 GTQIPGDLEPEKIPQIIM----LTFDGAVNL---NNYQHYQKIFDGKRKNPN------------- 161
            |:.:|..::|.....||.    ::.|..::.   |:..:|.|:...|.:|.|
Mouse    47 GSFLPDAIQPFLCTHIIYSFANISSDNMLSTWEWNDESNYDKLNKLKTRNTNLKTLLSVGGWKFG 111

  Fly   162 --------------GCLIRGT--FFMSHEYSN------YQQIQHLGYYG---HEIGTESISQ-QQ 200
                          ...:|..  |..|:.:..      |.:::...|:.   .|:..|...: |.
Mouse   112 EKRFSEIASNTERRTAFVRSVAPFLRSYGFDGLDLAWLYPRLRDKQYFSTLIKELNAEFTKEVQP 176

  Fly   201 GLQ---------------DKGYEEWVGEMIGMREILRH--FANVSVND-------VVGMRAPFLK 241
            |.:               |.||:        :.:|.:|  |.|:...|       :.|..:|..:
Mouse   177 GREKLLLSAALSAGKVAIDTGYD--------IAQIAQHLDFINLMTYDFHGVWRQITGHHSPLFQ 233

  Fly   242 PGRNTQYKVLEDFGYIYDSSITVPP------VPVPVWPYTLDYKISHECKSGTCPSRTFPGVWEV 300
            ..::|::....:..|.....|.:..      :.:|.:..:.....|.............||.:..
Mouse   234 GQKDTRFDRYSNVNYAVQYMIRLGAQASKLLMGIPTFGKSFTLASSENQLGAPISGEGLPGRFTK 298

  Fly   301 PLNTHYVEGYEGGHCPYLDQCVLHNLDEEEV------FQWL-QEDFSRYYEQNKAPYMMPFHTNW 358
            ...|  :..||  .|.:|....:|.|..|:|      .||: .||  :...:||..::.
Mouse   299 EAGT--LAYYE--ICDFLKGAEVHRLSNEKVPFATKGNQWVGYED--KESVKNKVGFLK------ 351

  Fly   359 FQTKPLENGLHKFLDWALELPDVYILTVTQMLQYVTDPKE 398
                  |..|...:.|||:|.|         .|....|||
Mouse   352 ------EKKLAGAMVWALDLDD---------FQGTCQPKE 376

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.