DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17598 and Ppm1m

DIOPT Version :9

Sequence 1:NP_001259780.1 Gene:CG17598 / 33140 FlyBaseID:FBgn0031194 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_038938543.1 Gene:Ppm1m / 686298 RGDID:1584266 Length:518 Species:Rattus norvegicus


Alignment Length:530 Identity:181/530 - (34%)
Similarity:273/530 - (51%) Gaps:71/530 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IAPDLPP------LPGN--SERAIGSGSGHHHSSTHQ-RLRFGASGGQPMP-------DKFPYAR 61
            ::|..||      :.|.  :.|...:..|.|..|... |.||...|..|.|       ...||.|
  Rat    26 LSPQAPPPARFLTVAGRTLASRCARAAPGRHAMSAGWFRRRFLPGGPLPEPRPPGPRSSPVPYHR 90

  Fly    62 PPFLQ--LLTPDELRASADHNVRPIIVPRDINLLPWGTGYAECVNSGKSEWNEDQ---GAFCRQ- 120
            |.||:  ..:|....||...:.||:..|.....|||..||||.:|:.|||:||||   |..|.: 
  Rat    91 PRFLRGSGSSPGANDASRRPDARPVRSPARGRTLPWNAGYAEIINAEKSEFNEDQAACGKLCIRR 155

  Fly   121 ----VLSDPEHKH--PD--LPYTYFGIFDGHAGYGAALAASHQFHHILHEKLVDCLELLLPRDAD 177
                :..|.|...  |:  |...|:.:||||.|..||:.|::..|..|..:|...:|.::.....
  Rat   156 CEFGIEEDQEWLTVCPEEFLTGHYWALFDGHGGPAAAILAANTLHSCLRRQLEVVVEGMMAAQPP 220

  Fly   178 ATNGGGEGNKLNPTFPHPIYFQRRVTKDELIIGALESAFFNMDSLIAQDCDRYRDAGGCTACVSL 242
            ....|......:|.|..    ::.:..::|:|||||:||...|.:|.::.:.....|||||.|::
  Rat   221 MHLSGRCVCSSDPQFVE----EKGIRAEDLVIGALENAFQECDDVIGRELEASGQVGGCTALVAV 281

  Fly   243 FIDGKMYVANAGDSRAVLCQRRATPERPQTNTDSGIEPDPLEASCYPVPFSADHTPETERERLLN 307
            |:.||:||||||||||:|.:|                 |.:..      .|::.||||||:|:..
  Rat   282 FLQGKLYVANAGDSRAILVRR-----------------DEIRL------LSSEFTPETERQRIQQ 323

  Fly   308 VARLKPHLMGKHYVAMEYAKRPHIKDMGQRILCRQGTMRGWTYKTLTMEDLCMPVVNGEGKRSRL 372
            :|...|.|:...:..:|:.:|....|:||::|.|...||||:||.:...||..|:::|:|:::||
  Rat   324 LAFTYPELLAGEFTRLEFPRRLKGDDLGQKVLFRDHHMRGWSYKQVEKTDLKYPLIHGQGRQARL 388

  Fly   373 LGTLGVTRGFGDHELLAINTGIQIKPFLTPHPDVRQRDLTQVVSIPDEDNRDGDYGVLVMATDGL 437
            ||||.|:||.|||:|..::|.||:||||...|.|...|:.| :::.::|       |:|||||||
  Rat   389 LGTLAVSRGLGDHQLRVLDTDIQLKPFLLSIPQVTVLDVDQ-LALQEDD-------VVVMATDGL 445

  Fly   438 WDVSENDAVSRTVFQTLSKYSTEKHRYTMVAQELVARARGKINDSGHWRLADSKAAATVDDISVI 502
            |||..|:.|:..|...|:....:.||::.:|:.|:...:||  |.|    |..:...:.||:||.
  Rat   446 WDVLSNEQVALLVRSFLTGNREDPHRFSELAKMLIHNTQGK--DGG----ASGEGQVSYDDVSVF 504

  Fly   503 VIPVCQYYKE 512
            |||:....:|
  Rat   505 VIPLSSQAQE 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17598NP_001259780.1 PP2Cc 98..506 CDD:238083 150/419 (36%)
Ppm1mXP_038938543.1 PP2Cc 162..508 CDD:238083 136/386 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 73 1.000 Domainoid score I9014
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D272116at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45549
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13832
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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