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Protein Alignment S6kII and Rps6kb1

DIOPT Version :9

Sequence 1:	NP_001259779.1	Gene:	S6kII / 33139	FlyBaseID:	FBgn0262866	Length:	911	Species:	Drosophila melanogaster
Sequence 2:	NP_114191.1	Gene:	Rps6kb1 / 83840	RGDID:	620683	Length:	525	Species:	Rattus norvegicus

Alignment Length:	457	Identity:	205/457 - (44%)
Similarity:	284/457 - (62%)	Gaps:	44/457 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly   138 ELMELSDSESQGGVETGGR-----REGATGRSAPDLEDTEPLYETENEFELKEV-IKEGHDKADP 196
            :|.:..|:.|:..:|.||:     ..|..|.....:|..|       :||:.|. :..|.:|..|
  Rat    31 DLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCE-------KFEISETSVNRGPEKIRP 88

  Fly   197 SQFELLRVLGEGSFGKVFLVRKIIGKDAGTLYAMKVLKKATL--KVKDRVRSTNERKILADVGHA 259
            ..||||||||:|.:||||.|||:.|.:.|.::||||||||.:  ..||...:..||.||.:|.|.
  Rat    89 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHP 153

  Fly   260 FIVRLHYAFQTPGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALAMNHLHTLGIIYRD 324
            |||.|.|||||.|||||||::|.||:||.:|.:|.:|.|:...|||||:::|:.|||..||||||
  Rat   154 FIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRD 218

  Fly   325 LKPENILLDEHGHIALTDFGLSKQPL-DGSKTYSFCGTVEYMAPEIVNRKGHDFAADWWSFGVLM 388
            ||||||:|:..||:.||||||.|:.: ||:.|::||||:|||||||:.|.||:.|.||||.|.||
  Rat   219 LKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALM 283

  Fly   389 YEMLTGNLPFHGQTRQETMNQILRSKLGMPENLSPEAQSLLRALFKRNPQNRLGAGAQGILDIKA 453
            |:||||..||.|:.|::|:::||:.||.:|..|:.||:.||:.|.|||..:|||||.....:::|
  Rat   284 YDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 348

  Fly   454 HCFFATIDWVRLERKQVRPPFIPAV-SRDDAFYFDVEYTSKSPRDSP-GGPISASAHEIFRGFSF 516
            |.||..|:|..|..::|..||.|.: |.:|...||.::|.::|.||| ...:|.||:::|.||::
  Rat   349 HPFFRHINWEELLARKVERPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTY 413

  Fly   517 VAPVLLEGQCAGSNMCSTSASPLHSIAPIPAAP---VGAPRTLPGVL---PGNFHAEYNLLQELG 575
            |||.:||           |.....|..|...:|   :|:|||....:   ||:|         .|
  Rat   414 VAPSVLE-----------SVKEKFSFEPKIRSPRRFIGSPRTPVSPVKFSPGDF---------WG 458

  Fly   576 RG 577
            ||
  Rat   459 RG 460

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.