DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and Usp8

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_001239509.1 Gene:Usp8 / 84092 MGIID:1934029 Length:1091 Species:Mus musculus


Alignment Length:564 Identity:171/564 - (30%)
Similarity:261/564 - (46%) Gaps:102/564 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   457 ISGDGGETATAMGQPTSKVTVRGAHSNRQPIECDSVVLTNKASKDATTAATPT----VATATATH 517
            :|.||.:.||.              :.||          :|:..:|:.|..|.    ..|:.|..
Mouse   545 LSADGAQEATG--------------TQRQ----------SKSEHEASDAKVPVEGKRCPTSEAQK 585

  Fly   518 TPATSSVSTVTVTAAAPNSASDSVSRSLARS-------------------PISSTLA--RSGTGS 561
            .||..|.::|:....|..:..:.::|  |||                   ||:.|..  .|.|.:
Mouse   586 RPADVSPASVSGELNAGKAQREPLTR--ARSEEMGRIVPGLPLGWAKFLDPITGTFRYYHSPTNT 648

  Fly   562 -----SSTARSVLPPMTPTSSRY-----WDRDSGTSR-----SSIGTSSALNSSSL--------- 602
                 ...|.|..||.||.:.:.     .:||...|:     ||...:.||.....         
Mouse   649 VHMYPPEMAPSSAPPSTPPTHKVKPQVPAERDREPSKLKRSYSSPDITQALQEEEKRRPAVTPMV 713

  Fly   603 -KHNSDDGYKTASSSRDEKSE-------------GLCGLRNIGNTCFMNSVIQCLSHTQELTRFL 653
             :.|....|..|..||...|:             .|.||||:||||:|||::|||.:...|..:.
Mouse   714 NRENKPPCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYF 778

  Fly   654 RSH------HGSRSLSTKDQQILHEFAKLIQEMWTANVHTVTPMELKRAFSTKHRMYSDYNQQDA 712
            ..:      :.|..|..|. ::..||..:::.:||.....::|.:.|......:..::..:|||:
Mouse   779 NRNCYQDDINRSNLLGHKG-EVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDS 842

  Fly   713 QEFLRFFLDSLHSALNSGVKGETLNIDDN--LSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTL 775
            ||.|.|.:|.||..||.....:....::|  |.|.:.|:..|:.:.:...|::..||.||.|||:
Mouse   843 QELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTV 907

  Fly   776 KCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFT 840
            :|.||...|.||:.|..||:||.|:|:|.|:.||.||.:||.|..:....|:.|:.||...|...
Mouse   908 QCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIE 972

  Fly   841 IQRFPKYLVIHLKRFS-ETRW-SKLSNIVEFPTSDSELNMGSYGANSNSNVHYSLYAISNHMGST 903
            |.:.|..|::|||||| :.|| .||...|:||..:.:|:....|. .||...|:|:::|||.|..
Mouse   973 IWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP-KNSLKKYNLFSVSNHYGGL 1036

  Fly   904 AGGHYVALCKHPVSRKWHEFNDNIVSDALSENHLVSSSAYILFY 947
            .||||.|.||:...::|.:|:|:.||| :|.:.:.||:||||||
Mouse  1037 DGGHYTAYCKNAARQRWFKFDDHEVSD-ISVSSVRSSAAYILFY 1079

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 123/332 (37%)
Peptidase_C19R 626..948 CDD:239139 124/332 (37%)
Usp8NP_001239509.1 USP8_dimer 6..126 CDD:286108
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..187
RHOD 210..321 CDD:197731
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..466
SH3-binding 416..424
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..616 22/96 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 653..721 14/67 (21%)
UCH 749..1079 CDD:278850 123/332 (37%)
Peptidase_C19R 751..1080 CDD:239139 124/332 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1868
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D469048at33208
OrthoFinder 1 1.000 - - FOG0000821
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101021
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.750

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