DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp2 and UBP9

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_192795.3 Gene:UBP9 / 826649 AraportID:AT4G10570 Length:923 Species:Arabidopsis thaliana


Alignment Length:676 Identity:159/676 - (23%)
Similarity:228/676 - (33%) Gaps:292/676 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   551 SSTLARSGTGSSSTARSVLPPMTPTSSRYWDRDSGTSRSSIGTSSALNSSSLKH--NSDDGYKTA 613
            ||..|.|.||:    ...|.|:.|  ||.....:|....|.|.|:..|.|....  :.|||..:.
plant   234 SSQSAMSSTGN----ELALVPLEP--SRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSL 292

  Fly   614 SSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTR-FLRSHHGSRSLSTKDQ-----QILHE 672
            |.....:..||.||.|:||||||||.:|||:||..:.. ||:.:  |..::..:.     ::...
plant   293 SILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDY--SDDINRDNPLGMCGELAIA 355

  Fly   673 FAKLIQEMWTANVHTVTPMELKRAFSTK----HRMYSDYNQQDAQEFLRFFLDSLHSALNSGVKG 733
            |..|::::|::..:.|.|    |||.||    ...:|.|||.|:||.|.|.||.||..||...:.
plant   356 FGDLLKKLWSSGRNAVAP----RAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRK 416

  Fly   734 ETLNIDDNLS--DNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVP 796
            ..:.:.|:.|  |::.|:..|.::....:|::.|:..||.||||.|..||..|:|||||..||||
plant   417 PYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVP 481

  Fly   797 LPS-------------------------------------------------------------- 799
            |||                                                              
plant   482 LPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIF 546

  Fly   800 ------------------------------SSRCKLE---------------------------- 806
                                          |.:.|||                            
plant   547 RYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVT 611

  Fly   807 ----------------------------------------------------------------- 806
                                                                             
plant   612 YVNTEPLSGTDIDAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASD 676

  Fly   807 ----------------------------------------------------------------- 806
                                                                             
plant   677 RELSFRIFLTDERGLNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAK 741

  Fly   807 ----------ACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFSETRW- 860
                      :||:.|:.||.|..|:|..|..||..|:..|...:.:.|..||.|||||:.:|: 
plant   742 KTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYL 806

  Fly   861 -SKLSNIVEFPTSDSELNMGSYGANSNSNVH-YSLYAISNHMGSTAGGHYVALCKHPVSRKWHEF 923
             :|:...|.||..|  |::..|..|.|...: |.|||:|||.|...||||.|..|.....||:.|
plant   807 KNKIDTFVNFPVHD--LDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHF 869

  Fly   924 NDNIVSDALSENHLVSSSAYILFYER 949
            :|:.|| :::|:.:.:|:||:|||.|
plant   870 DDSHVS-SVNESEIRNSAAYVLFYRR 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 134/597 (22%)
Peptidase_C19R 626..948 CDD:239139 134/596 (22%)
UBP9NP_192795.3 UBP12 17..894 CDD:227847 158/674 (23%)
DUSP 38..137 CDD:197831
Peptidase_C19 304..>480 CDD:271592 67/181 (37%)
USP7_C2 505..>566 CDD:291217 0/60 (0%)
Peptidase_C19R <740..893 CDD:239139 57/155 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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