DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp2 and usp32

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:XP_686236.6 Gene:usp32 / 557981 ZFINID:ZDB-GENE-100210-5 Length:1585 Species:Danio rerio


Alignment Length:1290 Identity:231/1290 - (17%)
Similarity:333/1290 - (25%) Gaps:699/1290 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 ICY----FKPITPPLQLRHEQNQV------QQQEEQPQPS--------------------SSKSA 292
            :|:    .:|.||     .|:.|:      ::.....|||                    .:||.
Zfish   359 VCHIVLGLRPATP-----EEEGQIIRGWLERESRHGLQPSQNWFLISMQWWQQWKDYVRYDNKSI 418

  Fly   293 SHRYPRPKSTIIASAHSNFAASFEKFSGGLYRQTNGETNIESKTSSNARRYGIDSLSIKASIEKF 357
            ....|..:.:.:.|:.|  |||.|..                     ..|.|:...|..:..|||
Zfish   419 VMEQPSVQGSGMRSSQS--AASVEPI---------------------LNRIGLVVRSPSSPEEKF 460

  Fly   358 -NNLSGQKRQNPGSGSGIGP---GSATASGLGGGRLSVASRSNHGSQAGGSSSNLQQRYSSDLDN 418
             :|:|.....:..:|:.:.|   .|||         .|.....|     ..|.|..|.:||    
Zfish   461 PDNISSSSEASESTGNSLTPHISSSAT---------DVCFARQH-----NISDNNNQCFSS---- 507

  Fly   419 IRVAAGY-SSSLTRAAYRTTATMNSVSTPVAVTSELGGP---------------ISGDGGETA-- 465
               |.|: .:||  |..|..|..|.   |:..|..:..|               :||...||.  
Zfish   508 ---ANGHLPNSL--AVQRPGAIDNQ---PLVTTEPMKAPTLTMEGGRLKKSHQLLSGREFETVPE 564

  Fly   466 -------------TAMGQPTSKVTVRGAHSNRQP-IECDSVVLTNKASKDATTAATPTVATATAT 516
                         .::.:|..|.||:.     || :|...:.|.             .:....||
Zfish   565 PVWRALYHWYGANLSLPRPVIKSTVKA-----QPELELFPLYLL-------------FLRQQPAT 611

  Fly   517 HTPATSSVSTVTVTAAAPNSASDSVSRSLARSPISSTLARSGTGS-SSTARSVLPPMT------P 574
            .:| .|::........:||            :|:...||.:|..| ..|.:.:...::      .
Zfish   612 RSP-QSNIWVNMGNVPSPN------------APLKRVLAYTGCFSRMCTIKDIHEYLSQRLRIKE 663

  Fly   575 TSSRYW------------DRDSGTSRSSIGTSSALNSSSLKH------NSDDGYK-----TASSS 616
            ...|.|            |.|.        |..:|.....:|      |.|..:.     .|:||
Zfish   664 EDMRLWLYNSENYLTLLDDEDH--------TLESLKIPDEQHLVIEVRNKDMSWPEEMSFIANSS 720

  Fly   617 RDEK-----SEGLCGLRNIGNTCFMNSVIQCLSHTQELTR-FLRSHH----------GSRSLSTK 665
            :.::     .:|..||.|:||||||||.|||:|:|:.||. |:...|          |.|....|
Zfish   721 KIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTKPLTEYFISGRHLYELNRTNPIGMRGHMAK 785

  Fly   666 DQQILHEFAKLIQEMWTANVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNSG 730
            .      :..|:||:|:.....|.|::|:...:.....::.:.|||:||.|.|.||.||..||..
Zfish   786 C------YGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRV 844

  Fly   731 VKGETLNI--DDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDL 793
            .:...:.:  .|...|::.|...||.:.|...|:|.|||.|||:|.:||.|||:.|..||||..|
Zfish   845 HEKPYVELKDSDGRPDHEVATEAWENHLRRNRSIVVDLFHGQLRSQVKCKTCGHISARFDPFNFL 909

  Fly   794 SVPLPSSSR-------------------------------------------------------- 802
            |:|||..|.                                                        
Zfish   910 SLPLPMDSSMHLEITVIKLDGSTPVRYGLRLNMDEKYMGLKKQLSELCSLKPEQILLAEVHTSNI 974

  Fly   803 ----------------------------------------------------------------- 802
                                                                             
Zfish   975 KNFPLDNQKVRHSVNGFLCAFEIPVPGSPTSVTSPVQTEKPPIANGTAGNNHIGKSGLIPNGMPS 1039

  Fly   803 ----------------------------------------------------------------- 802
                                                                             
Zfish  1040 TVVPCTLEKPLANGIPNGHAVPVQDSPFIGYIIAMHRKMMRTELYFLSSQKNRPSLFGMPLIVPC 1104

  Fly   803 ----------------------------------------------------------------- 802
                                                                             
Zfish  1105 TVHTSKKDLYDAVWIQVSRLASPLPPQEASNHAQDCDDSLGYQYPFTLRVVQKDGNSCAWCPWYR 1169

  Fly   803 -CK---------------------------------------------------------LEACL 809
             |:                                                         |::||
Zfish  1170 FCRGCTVDCNEDRASLGNAYIAVDWDPTALHLRYQTSQERIVEEHPSVEQSRRAQAEPISLDSCL 1234

  Fly   810 DLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFS--ETRWSKLSNIVEFP-- 870
            ..|..||.|..||:..|:||||.|..||...:.|.|..|::|||||.  ..||.|...||:||  
Zfish  1235 KAFTSEEELGEDELYYCSKCKTHRLATKKLDLWRLPPVLIVHLKRFQFVNGRWIKSQKIVKFPRE 1299

  Fly   871 ----------------------------------------------------------------- 870
                                                                             
Zfish  1300 SFDPSAFLAPREVSQSLGSLQSLQSECLVEELQRLERGDSSVSSISTTTLASPPISGRATPCSIR 1364

  Fly   871 ---------------------------------------------------TSDSELNMG----- 879
                                                               .|:||....     
Zfish  1365 RVGSPLSRNSSPGSSPRNTGRKQGRLRLPQLGSRHRLCNSKENLEACSTNKESESEAEQSAVTDG 1429

  Fly   880 -------------SYGANSN----------------SNVH---------------------YSLY 894
                         |..|:||                ||.|                     |:||
Zfish  1430 ENLTPDANTQDTWSLDASSNDCDVIMVNGLGQDSSQSNGHSEVSADLDTPHQRNDICLESLYNLY 1494

  Fly   895 AISNHMGSTAGGHYVALCKHPVSRKWHEFNDNIVSDALSENHLVSSSAYILFYER 949
            |||.|.|...|||||...|:| :.||:.:||:...:..|: .:.:.||||||||:
Zfish  1495 AISCHSGIMGGGHYVTYAKNP-NEKWYCYNDSSCKEVHSD-EIDTDSAYILFYEQ 1547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 142/819 (17%)
Peptidase_C19R 626..948 CDD:239139 143/818 (17%)
usp32XP_686236.6 EF-hand_7 236..293 CDD:290234
EFh 237..293 CDD:238008
EF-hand_7 270..342 CDD:290234
EFh 270..338 CDD:298682
DUSP <519..586 CDD:283896 11/69 (16%)
UBP12 521..1546 CDD:227847 185/1074 (17%)
Ubiquitin_3 623..710 CDD:291502 17/106 (16%)
Peptidase_C19 733..>918 CDD:271592 73/190 (38%)
Peptidase_C19 <1220..1546 CDD:271592 68/327 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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