DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and usp4

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:XP_002662556.2 Gene:usp4 / 449927 ZFINID:ZDB-GENE-041008-187 Length:1009 Species:Danio rerio


Alignment Length:799 Identity:162/799 - (20%)
Similarity:240/799 - (30%) Gaps:387/799 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   492 VVLTNKASKDATTAATPTVATATATHTPATSSVSTVTVTAAAPNSASDSVSRSLARSPISSTLAR 556
            |::..|.::|.|.       ...:.|:.:::|.|....|:..|:|.|.:.        ||||:..
Zfish   228 VLVIEKKNEDGTW-------PRQSCHSKSSTSTSRNYTTSPKPSSNSSAT--------ISSTITN 277

  Fly   557 SGTGSSSTARSVLPPMTPTSSRYWDRDSGTSRSSIGTSSALNSSSLKHNSDDGYKTASSSRDEKS 621
            ..:.|:|.               :..::.||.:.:|:          :||   |.::.|.|:..:
Zfish   278 GDSNSNSG---------------YMLNNSTSGNRLGS----------YNS---YSSSYSYRESAA 314

  Fly   622 E-GLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKDQ-----QILHEFAKLIQEM 680
            : |||||.|:||||||||.:||||:|..||.:.........::.::.     :|...:|.|:::|
Zfish   315 QPGLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLEDRYEAEINRENPLGMRGEIAEAYADLVKQM 379

  Fly   681 WTANVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNSGVKGETLNIDD--NLS 743
            |.:....|.|...|.........:|.|.|||:||.|.|.||.||..||...|...|.:.|  ...
Zfish   380 WLSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRP 444

  Fly   744 DNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEAC 808
            |...|...|..:....:|::.|:|.|..||||.|..|...|||||||..|::|||......:|..
Zfish   445 DEIVAKEAWANHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTMEVY 509

  Fly   809 L---------------------------------------------------------------- 809
            |                                                                
Zfish   510 LVRTDPQFRAMQFRVVVPKMGAVADLCSALAKLSGVPSENMVVADVYNHRFHKIYKRDDGLNQIM 574

  Fly   810 ---DLFIRE-------------------------------------------------------- 815
               |:|:.|                                                        
Zfish   575 EKDDIFVYEVLEEDSERMNLPVYFRERHAKHSGGSSGTMLFGQPLLITVPRLNLTVDTLYERVLE 639

  Fly   816 ----------------------------------------------------------------- 815
                                                                             
Zfish   640 RIGRYVKRSQGTITESRASASATSSSSSQSPECLASVSSHGTGLSGCSSPVSDGASCSAGSNGSN 704

  Fly   816 ---------EVLDGDE------------------------------------------------- 822
                     .|.||||                                                 
Zfish   705 HSGTCNGPNGVCDGDEEAMDHQESPEPENSHSDTVDGEEDSEPENGPNSSGGKSFNSRPKLFSFS 769

  Fly   823 ----------------------------------------------------------------- 822
                                                                             
Zfish   770 MVNSYGTANISSLPFDGNLLKLTTHSTVAIDWDSDTKRLCYDDQEAEAYDKHESMLHAQKKKTTV 834

  Fly   823 -----------MPT--------CAKCKTRRKCTKSFTIQRFPKYLVIHLKRFSETR-W-SKLSNI 866
                       |.|        |..||..::.||.|.:...|:.||:||||||..| | .||..:
Zfish   835 ALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTV 899

  Fly   867 VEFPTSDSELNMGSYGANSNSNVH-YSLYAISNHMGSTAGGHYVALCKHPVSRKWHEFNDNIVSD 930
            |:||..|  |||..:..:..::.: |.|.|:|||.|...||||.|..|:....||:.|:|:.|| 
Zfish   900 VDFPIRD--LNMSEFVCDPKADPYIYDLIAVSNHYGGMGGGHYTAYGKNKADGKWYYFDDSSVS- 961

  Fly   931 ALSENHLVSSSAYILFYER 949
            |.:|:.:|:.:||:|||:|
Zfish   962 AATEDQIVTKAAYVLFYQR 980

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 133/662 (20%)
Peptidase_C19R 626..948 CDD:239139 132/661 (20%)
usp4XP_002662556.2 UBP12 8..981 CDD:227847 162/799 (20%)
DUSP 44..141 CDD:197831
Ubiquitin_3 155..242 CDD:291502 4/20 (20%)
Peptidase_C19 319..>507 CDD:271592 69/187 (37%)
USP7_C2 526..>606 CDD:291217 3/79 (4%)
Peptidase_C19R <834..979 CDD:239139 54/147 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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