DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp2 and faf

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_524612.2 Gene:faf / 43749 FlyBaseID:FBgn0005632 Length:2778 Species:Drosophila melanogaster


Alignment Length:433 Identity:98/433 - (22%)
Similarity:158/433 - (36%) Gaps:139/433 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   621 SEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKD------------------- 666
            ::|.|||:|.|.||:||||:|.|.....:...:...||:.:...:|                   
  Fly  1664 TKGFCGLKNAGATCYMNSVLQQLYMVPAVRVGILRAHGAATTDGEDFSGDSDLTGGGLGSALFSG 1728

  Fly   667 ---------------QQILHE--------FAKLIQEMWTANVHTVTPMELKRAFSTKHRMYSD-- 706
                           :..||:        ..|.:|.::....|:.....:.|...|..::..:  
  Fly  1729 PASALVSLPSSSSTIEDGLHDVRKNYHVVILKHVQAIFAHLGHSALQYYVPRGLWTHFKLLGEPV 1793

  Fly   707 --YNQQDAQEFLRFFLDSLHSALNSGVKGETLN--IDDNLSDNKKADLTWEWYTRHENSLVRDLF 767
              ..||||.||....|:||...|.:..:.:.:|  :..:.||.|                     
  Fly  1794 NLREQQDAVEFFMSLLESLDEGLKALGQPQLMNATLGGSFSDQK--------------------- 1837

  Fly   768 VGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTR 832
                    .|..|.:.....:||...||.:.:.|  .|...|:.:::.|:|:|.:...|.||..:
  Fly  1838 --------ICQECPHRYSKEEPFSVFSVDIRNHS--SLTESLEQYVKGELLEGADAYHCDKCDKK 1892

  Fly   833 RKCTKSFTIQRFPKYLVIHLKRFSETRWS-----KLSNIVEFPTSDSELNMGSY----------- 881
            ....|...:::.|..|.|.|||| |..:.     |.::..|||..   |:|..|           
  Fly  1893 VVTVKRVCVKKLPPVLAIQLKRF-EYDYERVCAIKFNDYFEFPRI---LDMEPYTVSGLAKLEGE 1953

  Fly   882 ----GANSNSNVH---YSLYAISNHMGSTAGGHYVA--LCKHPVSRK--WHEFNDNIVSDA---- 931
                |.|..:||.   |.|..|..|.|..:||||.:  |.|:|.:.|  |::|:|..|::.    
  Fly  1954 VVEVGDNCQTNVETTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHE 2018

  Fly   932 ----------------LSENHLVSS---------SAYILFYER 949
                            ..:|:|...         :||:|||.|
  Fly  2019 DEEMKAECFGGEYMGETYDNNLKRMQYRRQKRWWNAYMLFYTR 2061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 94/426 (22%)
Peptidase_C19R 626..948 CDD:239139 94/425 (22%)
fafNP_524612.2 peptidase_C19C 1666..2064 CDD:239124 98/431 (23%)
UCH 1668..2059 CDD:278850 94/425 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456908
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.