DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and Usp47

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:728 Identity:160/728 - (21%)
Similarity:257/728 - (35%) Gaps:194/728 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 IEKFNNLSGQKRQNPGSGSGIGPGSATASGLGGGRLSVASRSNHGSQAGGSSSNLQQRYSSDLDN 418
            ::|.....|:|.::|.:|.              .:..|.........|.||||..:.:.:|: |:
  Fly   113 VKKVMKSDGEKAKSPATGE--------------KKKRVVGEKTKKKPASGSSSPSKAKTTSE-DS 162

  Fly   419 IRVAAGYSSSLTRAAYRTTATMNSVSTPVAVTS---------ELGGPISGDGGETATAMGQPTSK 474
            :...:..|.|......:...|...:|.|.:..:         ||...|:.....:.:.:.:.|:|
  Fly   163 LAKTSISSESSPEKTSKIKTTAAKISKPGSEKAPRASPEECPELSTEINSKNTSSESPVAKKTAK 227

  Fly   475 VTVRGAHSNRQPI---------ECDSVVLTNKASKDATTAATPTVATATATHTPATSSVSTVTVT 530
            ||.:.......||         :|:.|   :..||...:.............:|...:.|.:.::
  Fly   228 VTSKPTLELLSPIKPSSPIKELDCEPV---DTLSKQQLSEQLQLYPQGRNLISPVDDAPSDLFIS 289

  Fly   531 AAAPNSASDSVSRSLARSPISSTLARSG------TGSSST--ARSVLPPMT--------PTSSRY 579
            .|...| .|.::...:.||   |:...|      ||.|..  ...|..|.|        |..|.:
  Fly   290 DAEQLS-DDDLALGASASP---TMLGPGYDYGAPTGDSDVEGVTGVTDPSTIGTDDGTYPALSNF 350

  Fly   580 WDRDSGTSR----SSIGTSSALNSSSLKHNSDDGYKTASSSRDEKSEGLCGLRNIGNTCFMNSVI 640
            :.|..|...    ..:.|:.|...||....::...:.||..    ..|..||.|...||::||::
  Fly   351 YRRKYGGDELRAWQRVNTTGADFVSSATTETEAEARQASLG----PRGYVGLVNQAMTCYLNSLL 411

  Fly   641 QCLSHTQELTRFLRSHHGSRSLSTKDQQILHEFAKLIQEMWTANVHTVTPMELKRAF---STKHR 702
            |.|..|.|....|...........|:  |.::..||...:.|:....|...:|.|:|   ||:  
  Fly   412 QALFMTPEFRNALYRWEFDNDNEAKN--IPYQLQKLFLNLQTSPKAAVETTDLTRSFGWDSTE-- 472

  Fly   703 MYSDYNQQDAQEFLRFFLDSLHSALNSGVKGETLNIDDNLSDNKKADLTWEWYTRHENSLVRDLF 767
               .:.|.|.||..|...|:|               :....:.|:|            :|:.:|:
  Fly   473 ---AWQQHDIQELCRVMFDAL---------------EHKFKNTKQA------------NLISNLY 507

  Fly   768 VGQLKSTLKCTTCGNTSVTFDPFWDLSVPLP------SSSRCKLEACLDLFIREEVLDGDEMPTC 826
            .|::...:||..|.......|.|  |.:|||      ||:...:|..|..|::.|.|||:....|
  Fly   508 EGKMNDYVKCLECNTEKTREDTF--LDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLC 570

  Fly   827 AKCKTRRKCTKSFTIQRFPKYLVIHLKRFS---ETRWS-KLSNIVEFP----------------- 870
            .|||.:....|....:.||..|.:|||||.   :|... ||::.|.||                 
  Fly   571 EKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGE 635

  Fly   871 -------------TSDS------------------------ELNMGSYGANSNSNVH-------- 890
                         |:||                        :||....|.:.:|:..        
  Fly   636 QNSQLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSG 700

  Fly   891 ---YSLYAISNHMGSTAGGHYVALCKHPVSRKWHEFNDNIVSDALSEN----------------H 936
               |.|:||..|.||.:||||.|..|...:.:|..|||..|:....|:                :
  Fly   701 PYLYELFAIMIHSGSASGGHYYAYIKDFDNNEWFCFNDQNVTSITQEDIQRSFGGPNGSYYSSAY 765

  Fly   937 LVSSSAYILFYER 949
            ..|::||:|.|.:
  Fly   766 TSSTNAYMLMYRQ 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 102/416 (25%)
Peptidase_C19R 626..948 CDD:239139 102/415 (25%)
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188 24/129 (19%)
Rib_recp_KP_reg 122..265 CDD:282899 29/160 (18%)
peptidase_C19C 394..780 CDD:239124 104/421 (25%)
UCH 395..776 CDD:278850 102/416 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456898
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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