DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and Usp5

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_001246589.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster


Alignment Length:598 Identity:118/598 - (19%)
Similarity:192/598 - (32%) Gaps:198/598 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 RLSVASRSNHGSQAGGSSSNLQQRYS-SDLDNIRVAAGYSSSLTRAAYRTTATMNSVSTPVAVTS 451
            ||::      |.:.|.:.|::.::|. .|..:|.||......|         .......|:.||.
  Fly   101 RLAI------GVEGGYNESDMAKKYEIKDTYSIVVAPHLDKKL---------PYPDPELPMRVTQ 150

  Fly   452 ELGGPISGDGG----ETATAMGQPTSKVTVRGAHS-NRQPI-----------ECDSVVLTN---- 496
            .:...::.|..    |.||.||....:|.....:: |.|.:           :|:...|||    
  Fly   151 SVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLDNGKRIPPSGWQCEKCDLTNNLWL 215

  Fly   497 ----------KASKDATTAATPTVATATATHTPATSSVSTVTVTAAAPNSASDSVSRSLARSPIS 551
                      :...|.:......|.....|..|....:.|:|..                     
  Fly   216 NLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLAVKLGTITAD--------------------- 259

  Fly   552 STLARSGTGSSSTARSVLPPMTPTSSRYWDRDSGTSRSSIGTSSALNSSSLKHNSDDGYKTASSS 616
               .:|...|......||.|.......::..:....:.|   ..::....|..|...|..||.:.
  Fly   260 ---GKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKS---EKSMVELELDINQRIGEWTALTE 318

  Fly   617 RDEKSE-----GLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKDQQILHEF--- 673
            .:.:.:     |..|:||:||:|::|||:|.|        |:......|.:.|..::...||   
  Fly   319 SESELQPVAGPGYTGMRNLGNSCYINSVMQVL--------FVIPDFQQRFVGTGAERYFKEFPSD 375

  Fly   674 ---------AKL-----------IQEMWTANVHT--VTPMELKRAFSTKHRMYSDYNQQDAQEF- 715
                     |||           |.|......|:  ::|...|......|..:|...||||.:| 
  Fly   376 PANDFNIQMAKLGTGLQSGKYSSIAENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFY 440

  Fly   716 --------------------LRFFL-DSLHSALNSGVKGET---------------LNIDD--NL 742
                                |:|.| |.:....:..||..|               .|:|:  ..
  Fly   441 LHLLTLLDRNSRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREF 505

  Fly   743 SDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEA 807
            .:.|||       .|.....:.|..:.:.|                      ||        |:|
  Fly   506 QERKKA-------ARETGQRLPDRDIVRHK----------------------VP--------LQA 533

  Fly   808 CLDLFIREEVLDGDEMPTCAKCKTR-RKCTKSFTIQRFPKYLVIHLKRFS-ETRW--SKLSNIVE 868
            ||:.|...|::: ....|....||. ||.|:..|:   |..|:||:.:|: ...|  .||...|:
  Fly   534 CLERFFGPELIE-QFYSTAIGSKTNARKITRLATM---PDCLMIHVGKFTLGDDWVPKKLDVSVD 594

  Fly   869 FPTSDSELNMGSY 881
            .|   .||::.::
  Fly   595 MP---DELDLSNW 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 73/326 (22%)
Peptidase_C19R 626..948 CDD:239139 73/324 (23%)
Usp5NP_001246589.1 UBP14 24..825 CDD:227532 118/598 (20%)
zf-UBP 204..278 CDD:280334 15/97 (15%)
Peptidase_C19B 333..823 CDD:239123 73/324 (23%)
UBA1_UBP5_like 631..674 CDD:270480
UBA2_UBP5 696..737 CDD:270569
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456906
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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