DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and DUBAI

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_610784.1 Gene:DUBAI / 36361 FlyBaseID:FBgn0033738 Length:852 Species:Drosophila melanogaster


Alignment Length:516 Identity:126/516 - (24%)
Similarity:201/516 - (38%) Gaps:125/516 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   532 AAP---------NSASDSVSRSLARSP--------ISSTLARSGTGSSSTARSVLPPMTPTSSRY 579
            |||         |...:...:.|.|.|        .|:|:...|..:....:.::...:....|:
  Fly   250 AAPVVFHMLSTINQTPEVFHKILPRIPRVLQYVKNQSTTMDEIGLETKKCLQQLVDLTSALMLRF 314

  Fly   580 WDRDSGTSRSSIGTSSALNSSSLKHNSDDGYKTASSSRDE--KSEGLCGLRNIGNTCFMNSVIQC 642
            :|:|    ...:.|..||.:.....|.....|....:...  :.....||.|:||||:||||:|.
  Fly   315 YDQD----ELYVATKKALQTYEPSPNCVALAKAMHENAQPWGRRNARVGLVNLGNTCYMNSVLQA 375

  Fly   643 LSHTQELTRFLRSHHGSRSLSTKDQQ---ILHEFAKLIQEMWTANVHTVTPMELKRAFSTKHRMY 704
            |:.|.:.:|.:.....:..|..|.||   ::|...:          :.:||..:..|  |:...:
  Fly   376 LAMTSDFSRQILLIECNSVLLMKVQQQIALMHHSLR----------YELTPSRVLNA--TRPPSF 428

  Fly   705 SDYNQQDAQEFLRFFLDSLH--------------------------------SALNSGV-----K 732
            :...|||:.|||.:.||.||                                ..|:|||     |
  Fly   429 TPGLQQDSSEFLGYLLDLLHEHEINSSSVTGHSVGPPKTGREVDDVPALLSEDILSSGVIPYNSK 493

  Fly   733 GETLNIDDNLSDN---KKADLTWEWYTRHENSL---------------VRDLFVGQLKSTLKCTT 779
            ...|:...| |||   |.........|:..|.|               :...|.|:|.:|.:|..
  Fly   494 DHELSSGSN-SDNCNHKPTPTPPATPTKATNGLKQQGQQVDQAKPPSTIDKTFAGKLSTTYRCLN 557

  Fly   780 CGNTSVTFDPFWDLSVPLP------SSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKS 838
            ||..|...|.|.:|.:..|      .::...::..::.:...|.||||....|.:||......:.
  Fly   558 CGWESRNEDSFRELQLSFPDDKEDCGATNYSVQDLIEYYCSPEKLDGDNQYFCPQCKKLCDAERH 622

  Fly   839 FTIQRFPKYLVIHLKRFS-ETRW---SKL--------SNIVEFPTSDSELNMGSYGANSNSNVHY 891
            ..:.:.||.|::.||:|. :.::   :||        |..|:....||...|        |.|||
  Fly   623 IGVTQAPKNLILTLKQFKYDQKYHFRTKLMHKVFHDESVTVKMSAKDSLQEM--------STVHY 679

  Fly   892 SLYAISNHMG-STAGGHYVALCKHPVSRKWHEFNDNIVSDALSE--NHLVS-SSAYILFYE 948
            .|||...|.| |...|||....... ::.|::||||:|:.:..|  ::|.| ::.|||||:
  Fly   680 DLYAGVVHAGYSMDSGHYFTFAADQ-AKNWYKFNDNVVTHSKPEEMHNLTSPNTPYILFYK 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 106/402 (26%)
Peptidase_C19R 626..948 CDD:239139 107/401 (27%)
DUBAINP_610784.1 UCH 358..738 CDD:278850 106/401 (26%)
Peptidase_C19H 359..739 CDD:239129 107/401 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456873
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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