DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and Usp16-45

DIOPT Version :10

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_572220.1 Gene:Usp16-45 / 31458 FlyBaseID:FBgn0029763 Length:1126 Species:Drosophila melanogaster


Alignment Length:570 Identity:131/570 - (22%)
Similarity:208/570 - (36%) Gaps:137/570 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   488 ECDSVVLTN--------------KASKDATTAATPTVATATATHTPATSSVSTVT-VTAAAPNSA 537
            |||..:.:|              .|.|..|:..||:..|.:.......:::..:| :......|.
  Fly   154 ECDMKICSNLRKNLLECVELVKKLAQKPPTSTVTPSTPTISYIEEKLKAALEHLTPIVPMTGGSF 218

  Fly   538 SDSVSRSLARSPISSTLARSGTG---SSSTARSVLPPMTP--TSSRYWDRDSGTSRSSIGTSSAL 597
            .||.||        .:||.:|.|   .||..|.|..||.|  .||.....||.||..  |.:..:
  Fly   219 DDSSSR--------GSLAAAGGGGGVGSSRNRQVAIPMPPPEPSSGLSTSDSLTSVP--GMAKRI 273

  Fly   598 NSSSLKHNSDDGYK---TASSSR--DEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLR--S 655
            :..|...|.:.|.|   |..:.|  :|:...:.||.|:|||||.|:|:|||:.|..|...|:  |
  Fly   274 DQYSATTNGNTGNKRLLTLETPRIENERLPRVRGLTNLGNTCFFNAVMQCLAQTPFLLSVLKELS 338

  Fly   656 HHGSR------SLSTKDQ----------------QILHEFAKLIQEMWTANVHTVTPMELKRAFS 698
            ..|..      :.:.||:                .:....|..::|: .|.....||.:|.....
  Fly   339 EPGEEFILPGGTFTIKDKGDIELPMIKGTLSSWGGLTAALANALEEL-QAGGSVFTPRKLFDRLC 402

  Fly   699 TKHRMYSDYNQQDAQEFLRFFLDSLHS----------ALNSGVKGETLN-IDDNLSDNKKADLTW 752
            .|...::..:|.||.|.||..|:|:.:          ..|.|.|.:.:| :.:.:....|.    
  Fly   403 VKCPQFTGGDQHDAHELLRQLLESVRNEDLKRYQRVILQNLGYKDQDVNSVSEEMRQKCKI---- 463

  Fly   753 EWYTRHENSLV---RDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVP------------------ 796
              |.......:   ..:|.|.|.|||.|..|.|.|...:.|.|:|:|                  
  Fly   464 --YGNQAGDRILRPEQVFRGFLVSTLTCQDCHNVSSRHEYFLDMSLPVAVEKPQPPQRRKPSPEL 526

  Fly   797 -LPSSSRCKLEACLDLFIREEVLDGDEMPTCA----------------------KCKTRRKCTKS 838
             |.|||.....:.....|..:..||....|.:                      |.|.|::..|.
  Fly   527 SLTSSSSSVTPSTGQPTINTKFTDGSVNFTASSPSFFLHAHEAASLGPSKSQVKKEKERQRKAKR 591

  Fly   839 FTIQRFPKYLVIHLKRFSETRWSKLSNIVEFPTSDSEL-NMGSYGANSNSNVHYSLYAISNHMGS 902
            ...:|....|  :|........::|:..|:  ..|:.| ::|:....:|..:..     :|....
  Fly   592 AAKKRQKSSL--NLNGNDSGNGNELAESVD--QDDASLASLGAGDGQANDGLEQ-----TNGQTE 647

  Fly   903 TAGGHYVALCKHPVSRKWHEFNDNIVSD--ALSENHLVSSSAYILFYERT 950
            .:....|...:|..:    :..||:|.|  |.|.|::.||:|.:....:|
  Fly   648 DSTTSSVTTSEHSDA----DVEDNLVEDTAAPSTNNVPSSTASLTAPSKT 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UBP12 <620..>800 CDD:227847 56/236 (24%)
Peptidase_C19R 626..948 CDD:239139 89/403 (22%)
Usp16-45NP_572220.1 zf-UBP 108..159 CDD:460464 3/4 (75%)
UBP12 <307..990 CDD:227847 90/407 (22%)
Peptidase_C19 307..>512 CDD:470612 55/211 (26%)
Peptidase_C19K <849..1123 CDD:239132
Blue background indicates that the domain is not in the aligned region.

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