DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp2 and ubp4

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_001342719.1 Gene:ubp4 / 2540837 PomBaseID:SPBC18H10.08c Length:593 Species:Schizosaccharomyces pombe


Alignment Length:528 Identity:143/528 - (27%)
Similarity:229/528 - (43%) Gaps:73/528 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   474 KVTVRGAH------SNRQPIECDSVVLTNKASKDATTAATPTVATATATHTPATSSVSTVTVTAA 532
            :::|:..|      ..:..|:..|...|.| ||.|.....|.:..:.|......||:..:.:...
pombe    68 EISVKSTHYGEFKQFQKLAIQAVSKAFTIK-SKLAVKHYLPVIQISDALSLSKKSSLKVLFLNFY 131

  Fly   533 APNSASDSV-SRSLARSPISSTLARSGTGSSSTARSVLPPMTPTS------SRYWDRDSGTSRSS 590
            :..|:...| |:.....|||...:...:......:|.  |..|:.      .||::        .
pombe   132 SQESSKGYVFSKHTIAIPISCLQSMDSSKIYDFLKSA--PFHPSMVICYSLERYFE--------D 186

  Fly   591 IGTSSALNSSSLKHNSDDGY------KTASSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQEL 649
            :..:..|.|.......|..:      |...||...::....||.|:||||:||.|:|||...::|
pombe   187 VSLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNCVLQCLFACKDL 251

  Fly   650 T-RFLRSHHGSRSLSTKDQ-----QILHEFAKLIQE-MWTANVHTVTPMELKRAFSTKHRMYSDY 707
            | ..|:.....::::||:.     :|...|..|:|. :......:::|........:.:|.:|..
pombe   252 TIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSID 316

  Fly   708 NQQDAQEFLRFFLDSLHSALNSGVKGETLN--IDDNLSDNKKADLT------WEWYTRHENSLVR 764
            .|.||||||.||||.||..|||......:.  .:|.||..::..|:      |..:.|...|:|.
pombe   317 GQCDAQEFLNFFLDKLHEDLNSNASRSPIAPLTEDQLSAREELPLSHFSHIEWNLHLRSNKSIVV 381

  Fly   765 DLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSR-CKLEACLDLFIREEVLDGDEMPTCAK 828
            :.|||||.|..:|.|||.||.||.||..|::|:...|. ..|:.||..|...|:|.|.:...|..
pombe   382 NNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVVSLQECLLKFSAPELLQGHDGWHCPV 446

  Fly   829 CKTRRKCTKSFTIQRFPKYLVIHLKRFSETRWSK------LSNIVEFPTS-----DSELNMGSYG 882
            ||.:|...|...|.:.|:||:|.::||..:...:      |...::.|:.     ..:..:|...
pombe   447 CKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRKKIDTPLGLSLQIPSKMLVPPSFQSGIGYIP 511

  Fly   883 ANSNSNVHYSLYAISNHMGSTAGGHYVALCKHPVSRKWHEFNDNIVSDA-----LSENHLVSSSA 942
            :|      |:|:|...|.|....|||::  ....:.:|...:|:||...     |.|:.   ||:
pombe   512 SN------YNLFAFICHYGQLENGHYIS--DVLFNNEWCHIDDSIVRTVGGITDLREDF---SSS 565

  Fly   943 YILFYERT 950
            |||||:|:
pombe   566 YILFYKRS 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 110/354 (31%)
Peptidase_C19R 626..948 CDD:239139 111/353 (31%)
ubp4NP_001342719.1 COG5533 156..574 CDD:227820 124/439 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1868
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000821
OrthoInspector 1 1.000 - - otm47261
orthoMCL 1 0.900 - - OOG6_101021
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.740

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