DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and ubp12

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_588530.1 Gene:ubp12 / 2538990 PomBaseID:SPCC1494.05c Length:979 Species:Schizosaccharomyces pombe


Alignment Length:684 Identity:139/684 - (20%)
Similarity:198/684 - (28%) Gaps:351/684 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly   614 SSSRDEKSE----GLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKDQ-----QI 669
            ||:.::|.|    |.|||.|:||||:|||.:|||:||:||..|..|......::..:.     |:
pombe   296 SSNEEQKQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQV 360

  Fly   670 LHEFAKLIQEMWTANVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNS----- 729
            ...||.||:.:::....:..|.:.|......:..:..|.|||:||||.|.||.||..||.     
pombe   361 ASIFASLIKSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNRIYQKP 425

  Fly   730 -GVKGETLNIDDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDL 793
             ..|.:...:|:....| .|:..|..:....:||:.|||.|..:|||.|..|...|:|||||.||
pombe   426 YTSKPDLYEVDEEKIKN-TAEECWRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVSITFDPFMDL 489

  Fly   794 SVPLP------------------------------------------------------------ 798
            ::|||                                                            
pombe   490 TLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDLVKYVAEKSGCSDYRKILVTETYK 554

  Fly   799 ----------------------------------------------------------------- 798
                                                                             
pombe   555 GRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISDDSTNSANSYMSSRDFG 619

  Fly   799 ----------------------------------------------------------------- 798
                                                                             
pombe   620 HPFVLQLSDNEVTDASFISEKLKLKYQQFTTLKNLKNIDSLESLELGHEDEQVQKGPLDVDMDHS 684

  Fly   799 ----------------------------------------------------------------- 798
                                                                             
pombe   685 QTPLFEMRVFHDRFEKIPTGWNMSVSNLPLLTERDKKDLESTVDPLDAHSIEEEDDSEFKDVAPG 749

  Fly   799 -------SSSRCKLEA------------------------------------------------- 807
                   |:...||.|                                                 
pombe   750 SYPEPSKSNENTKLTAKENDRLLIQGDLLVCEWPEKSYQFVFSVAPSSPQMGRSLWLESKTILSD 814

  Fly   808 ---------------CLDLFIREEVLDGDEMP-TCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFS 856
                           |||.|.:.|.| |:|.| .|..||..|:.:|...|.|.|:.|:.||||||
pombe   815 KKDDSEDSRTITLNDCLDEFEKTEQL-GEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFS 878

  Fly   857 ETR--WSKLSNIVEFPTSDSELNM--GSY--GANSNSNVHYSLYAISNHMGSTAGGHYVALCKHP 915
            ..|  ..|:.::||||..:.:::|  |||  ....|..:.|.|||:.||.|...||||.|..|:|
pombe   879 SERRFRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAKNP 943

  Fly   916 VSRKWHEFNDNIVSDALSENHLVSSSAYILFYER 949
            .:.:::.|:|:.|:....| ..|:|:||:|||.|
pombe   944 DNGQFYCFDDSRVTPVCPE-ETVTSAAYLLFYRR 976

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 131/666 (20%)
Peptidase_C19R 626..948 CDD:239139 131/665 (20%)
ubp12NP_588530.1 UBP12 33..978 CDD:227847 139/684 (20%)
DUSP 69..155 CDD:197831
Peptidase_C19 312..>513 CDD:271592 68/201 (34%)
USP7_C2 519..>648 CDD:291217 0/128 (0%)
Peptidase_C19R <825..975 CDD:239139 59/151 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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