DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp2 and usp-50

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:NP_507513.2 Gene:usp-50 / 180175 WormBaseID:WBGene00008441 Length:811 Species:Caenorhabditis elegans


Alignment Length:811 Identity:199/811 - (24%)
Similarity:310/811 - (38%) Gaps:167/811 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 SSSKSASHRYPRPKSTIIASAHSNFAASFEKFSGGLYRQTN-----GET-NIESKTSSNAR--RY 343
            |.::..:.::.:....::..:..|...|.||..|.|.:|..     ||. ||.:|:|..||  :.
 Worm    19 SLTEQQTRQFEQKSLDVVYQSLKNLQGSAEKARGDLEQQYRLLMKAGELGNIITKSSKFARWKQN 83

  Fly   344 GIDSLSIKASIE---------------KFNNL----SGQKRQNPGSGSGIGPGSATASGLGGGRL 389
            ..::....|..|               |:.||    ..|||....:...........|.:...|.
 Worm    84 TANAALFYADFEKVVREASNLQSVLNIKYENLVRRADTQKRAEQEAADKRAATITVDSTMRAVRA 148

  Fly   390 SVASR------SNHGSQAGGSSSNLQQRYS-------SDLDNIRVAAGY---SSSLTRAAYRT-- 436
            .:..|      .|...:......:::|..|       |::..: :...|   .||||.|::||  
 Worm   149 KITPRELVRKVENDTPKKSALIFDIRQNQSDAIFYNRSEMITV-IQVPYDMIDSSLTFASFRTNL 212

  Fly   437 TATMNSVSTPVAVTSELGGPISGDGGETATAMGQPTSKVT---------------------VRGA 480
            ..|..::...:: ||:....:..||.|.......|.||::                     :.|.
 Worm   213 AVTQRALLARLS-TSDYVVLMDDDGPELVNTSPLPKSKMSFLFKALTQYNQSERLRERPMFMEGG 276

  Fly   481 H-----------SNRQPI--------ECDSVVLTN---------------KASKDATTAATPTVA 511
            .           .|.||:        |.|.|:...               ...:...||.||. |
 Worm   277 FKMWKAQYPTYTKNEQPVTPRSIPSDELDDVISAYHRNYPMISEIRYPDLNTMRPEPTAQTPP-A 340

  Fly   512 TATATHTPATSSVSTVTVTA---------AAPNSASDSVSRSLA--RSPISSTLARSGTGSSSTA 565
            .|.....||.:..||:...|         :.|:|...:..:.:|  ..||...|.|:...|:...
 Worm   341 PAAPPAAPALNRQSTIPPVAMTQRPMIPPSLPSSTPPAPLKPVAPPTPPIFPLLDRTSKPSTLPE 405

  Fly   566 RSVLPPMTPTSSR-----------YWDRDSGTSRSSIGTSSALNSS--SLKHNSDDG-YKTASSS 616
            |    |:.|:.:|           ..||.:..:..:..||....:.  |:....|.. ::....|
 Worm   406 R----PIDPSPTRQNGGGEVKRPPLLDRATKPNAQNAQTSKQHEAQLLSIYDQMDMAIHRVVDDS 466

  Fly   617 RDEKSEGL---CGLRNIGNTCFMNSVIQCLSHTQELTRFL-----------RSHHGSRSLSTKDQ 667
            ...|..|:   .||.|:||||||::.:|||..|..|....           :|..||:.:     
 Worm   467 TRNKGRGVPGAVGLFNMGNTCFMSATLQCLFQTPGLAEVFTKKVFVSKVNTQSRLGSKGV----- 526

  Fly   668 QILHEFAKLIQEMWTANVHTVTPMELKRAFS-TKHRMYSDYNQQDAQEFLRFFLDSLHSALNSGV 731
             |...||.|...:|......:.|....:.|| |.::..||..|.||.||..|.||:||...|   
 Worm   527 -ISAGFASLSDMIWNGTFTAIRPSRFLQLFSDTVYQPLSDGRQHDASEFQIFLLDALHEDTN--- 587

  Fly   732 KGETLNIDDNLSD-----NKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFW 791
            :.:.::.:.|...     .:.||...:.| :...|.|..|......|.::|.|||.:|.||:...
 Worm   588 QAQRISFEQNYHGGAGIAKEAADFLKKHY-QFSLSPVNRLLGSITVSEIRCLTCGASSATFEENT 651

  Fly   792 DLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFS 856
            .:||.:||:|.|.|:.||.....:..||||....|.|||..|..|::..:.:.|..::||||||:
 Worm   652 IISVEIPSNSSCSLDMCLRSHFSQTKLDGDSRWNCPKCKEPRASTRTSKLWQPPPVMIIHLKRFA 716

  Fly   857 --ETRWSKLSNIVEFPTSDSELNMGSYGANSNSNVHYSLYAISNHMGSTAGGHYVALCKHPVSRK 919
              ...:.|.:..|.|.|:..::....:.........|.|||.:.|.|....|||.|:..|..|.|
 Worm   717 LFNGDFEKNTAAVTFETARFDVRPYLHEMAPAEKPVYKLYAATLHNGRLNSGHYTAVASHLRSDK 781

  Fly   920 WHEFNDNIVSDALSENHLVSSS-AYILFYER 949
            |..|:|::|:..  ||..|..| ||||||:|
 Worm   782 WLRFDDSVVTPC--ENFKVDPSLAYILFYKR 810

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 109/345 (32%)
Peptidase_C19R 626..948 CDD:239139 110/341 (32%)
usp-50NP_507513.2 USP8_dimer 8..114 CDD:370218 19/94 (20%)
UCH 478..808 CDD:366104 109/341 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1868
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D469048at33208
OrthoFinder 1 1.000 - - FOG0000821
OrthoInspector 1 1.000 - - otm14278
orthoMCL 1 0.900 - - OOG6_101021
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.750

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