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Protein Alignment Usp2 and Usp15

DIOPT Version :9

Sequence 1:	NP_001285528.1	Gene:	Usp2 / 33132	FlyBaseID:	FBgn0031187	Length:	950	Species:	Drosophila melanogaster
Sequence 2:	NP_081880.2	Gene:	Usp15 / 14479	MGIID:	101857	Length:	981	Species:	Mus musculus

Alignment Length:	731	Identity:	159/731 - (21%)
Similarity:	226/731 - (30%)	Gaps:	348/731 - (47%)

- Green bases have known domain annotations that are detailed below.

  Fly   547 RSPISSTLARSGTGSSSTARSVLPPMTPTSSRYWDRDSGTSRSSIGTSSALNSSSL--KHNSDDG 609
            |.|  ||....|..:.||    ||.::|:|       ...:.::|...:..||:..  .:.:...
Mouse   222 RGP--STPKSPGASNFST----LPKISPSS-------LSNNYNNINNRNVKNSNYCLPSYTAYKN 273

  Fly   610 YKTASSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKDQ-----QI 669
            |..:...|:.:..|||||.|:||||||||.|||||:|..||.:..:......|:..:.     :|
Mouse   274 YDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEI 338

  Fly   670 LHEFAKLIQEMWTANVHTVTPMELKRAFSTK----HRMYSDYNQQDAQEFLRFFLDSLHSALNSG 730
            ...:|:||::||:.....|||    |||.|:    ...:|.|.|||.||.|.|.||.||..||..
Mouse   339 AKSYAELIKQMWSGKFSYVTP----RAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRI 399

  Fly   731 VKGETLNID--DNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDL 793
            .|...:.:.  |...|...|:..||.:.:..:|::.|:|.|..||||.|..|...|||||||..|
Mouse   400 RKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYL 464

  Fly   794 SVPLPSSS--------------------------------------------------------- 801
            ::|||...
Mouse   465 TLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVPADKMIVTDIYNHR 529

  Fly   802 ----------------------------------------------------------------- 801

Mouse   530 FHRIFAVDENLSSIMERDDIYVFEININRAEDTEHVVIPVCLREKFRHSSYTHHTGSSLFGQPFL 594

  Fly   802 -------------------------------------RC-------------------------- 803
                                                 ||
Mouse   595 MAIPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEMETD 659

  Fly   804 ----------------------------------------------------------------- 803

Mouse   660 EPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNNDI 724

  Fly   804 --------------------------------------------------------------KLE 806
                                                                          ||:
Mouse   725 NYIKDDTSHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKRPFVKLK 789

  Fly   807 ACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFSETRW--SKLSNIVEF 869
            .|::||..:|.|..::...|..||..::.||...:...|..||:||||||.:|:  .||..:|:|
Mouse   790 DCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDF 854

  Fly   870 PTSDSELNMGSYGANSNSN-VHYSLYAISNHMGSTAGGHYVALCKHPVSRKWHEFNDNIVSDALS 933
            |.||  |:|..:..|.|:. ..|:|.|:|||.|...||||.|..|:....||:.|:|:.||.| |
Mouse   855 PISD--LDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTA-S 916

  Fly   934 ENHLVSSSAYILFYER 949
            |:.:||.:||:|||:|
Mouse   917 EDQIVSKAAYVLFYQR 932

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.