DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp2 and Usp37

DIOPT Version :9

Sequence 1:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster
Sequence 2:XP_006245354.1 Gene:Usp37 / 100361658 RGDID:2319715 Length:979 Species:Rattus norvegicus


Alignment Length:655 Identity:147/655 - (22%)
Similarity:233/655 - (35%) Gaps:206/655 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 QLRHEQNQVQQQEEQPQPSSSKSASHRYPRPKSTIIASAHSNFAASFEKFSGGLYRQTNGETNIE 333
            ||.|....|..     :||.:|         :|.::.:...|...|.:|              :.
  Rat    52 QLSHNIKNVVL-----RPSGTK---------QSRLMLTLQDNSFLSIDK--------------VP 88

  Fly   334 SKTSSNARRYGIDSLSIKASIEKFNNLSGQKRQNPGSGS-GIGPGSATASGLGGGRLSVASRSNH 397
            ||.:...|.: :|::       ..|.|....:.:.|||| |...||.|:......:||.:.    
  Rat    89 SKDAEEMRLF-LDAV-------HQNRLHAAMKSSQGSGSFGTILGSRTSQKETNRQLSYSD---- 141

  Fly   398 GSQAGGSSSNLQQR----YSSDLDN-----IRVAAGYSSSLTRAAYRTTATMNSVSTPVAV---- 449
             :||.....:|:.:    :...|.|     |:...|...::|    ||..::...|||:..    
  Rat   142 -NQASSKRGSLETKDEIPFRKVLGNPGRGPIKTVTGSGMAVT----RTIPSLTLTSTPLRTGLLE 201

  Fly   450 -----------TSEL--GGPISGDGGETATAMGQPTSK---------VTVRGAHSNRQ----PIE 488
                       .|||  ..|...|......||..|:.|         ::::.|..||.    |::
  Rat   202 NRTEKRKRMLSGSELTEDYPKENDSSSNNKAMTDPSRKYLSSSREKQLSLKQAEENRTPGLLPLQ 266

  Fly   489 CDSVVLTNKASKDATTAATPTVATATATHTPATSSVSTVTVTAAAPNSASDSVSRSLARSPISST 553
            ..|...:...|||.::..|                                    :|.|..||:.
  Rat   267 SSSFYGSRTGSKDYSSGGT------------------------------------NLDRCNISNQ 295

  Fly   554 LARSGTGSSSTARSVLPPMTPTSSRYWDRDSGTSRSSIGTSSALNSSSLKHNSD-DGYKTASSSR 617
                 |.|:..:...||..||                      |:...|:.|.| .|:....:..
  Rat   296 -----TPSAKRSLGFLPQPTP----------------------LSVKKLRCNQDYTGWNKPRAPL 333

  Fly   618 DEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSLSTKD---QQILHEFAKLIQE 679
            ....:.|.|..|:||||:||:::|.|...|.....|.    .:|:..|.   ..::..||.|:.:
  Rat   334 SSHQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLL----KQSIPWKKIPLNALIRRFANLLIK 394

  Fly   680 MWTANVHTVTPM--ELKRAFSTKHRMYSDYNQQDAQEFLRFFLDSLHSALNSGVKGETLNIDDNL 742
            ...:|..|...:  ::|.|.|.....:|.|.|.||.|||...||.|.                  
  Rat   395 KDISNSETKKELLKKVKNAISATAERFSGYVQNDAHEFLSQCLDQLK------------------ 441

  Fly   743 SDNKKADLTW--EWYTRHENS------------LVRDLFVGQLKSTLKCTTCGNTSVTFDPFWDL 793
            .|.:|.:.||  |.....|||            ::.:|.. :::.::.|..||.|....:.|.||
  Rat   442 EDMEKLNKTWKTEPVLGEENSPDTSATKVFTCPVITNLEF-EVQHSIICKACGETIPKREQFNDL 505

  Fly   794 SV-------PLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYLVIH 851
            |:       |||..|   ::..||||.|.|.|:    .:|.||..:....:...| |.|:.|::|
  Rat   506 SIDLPRRKKPLPPRS---IQDSLDLFFRAEELE----YSCEKCGGKCALVRHKFI-RLPRVLILH 562

  Fly   852 LKRFS 856
            |||:|
  Rat   563 LKRYS 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp2NP_001285528.1 UCH 624..947 CDD:278850 74/259 (29%)
Peptidase_C19R 626..948 CDD:239139 73/257 (28%)
Usp37XP_006245354.1 UCH_N 3..104 CDD:293279 15/87 (17%)
Peptidase_C19 342..>603 CDD:239072 73/257 (28%)
UCH 342..>600 CDD:278850 73/257 (28%)
Peptidase_C19 <881..949 CDD:239072
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1868
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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