DRSC/TRiP Functional Genomics Resources

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Protein Alignment wap and LWD2

DIOPT Version :9

Sequence 1:NP_001245797.1 Gene:wap / 33131 FlyBaseID:FBgn0266848 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_189298.1 Gene:LWD2 / 822276 AraportID:AT3G26640 Length:346 Species:Arabidopsis thaliana


Alignment Length:352 Identity:197/352 - (55%)
Similarity:249/352 - (70%) Gaps:27/352 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSTAGKRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIEEYNNKVQIISLDEDTSEFSAKST- 65
            |....||.|||.|.|||.:|:||||:|.||::|||:.|.||:|.|:|:|:.|||...|..:... 
plant    12 SEEQSKRSEIYTYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNL 76

  Fly    66 -FDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRVWRAGEPDTRLE---CVLNNNKNSDFCAPLTS 126
             |:||||.||..:|||.:...|||||||.|:||:||..:.::|:|   | |:::|||:|..|:||
plant    77 CFEHPYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSC-LSSDKNSEFSGPITS 140

  Fly   127 FDWNEVDPNLVGTSSIDTTCTIWGLETGQPHARVYVAGHVKTQLIAHDKEVYDIAFSRAGGGRDM 191
            |||||.:|..:||||||||||||.:|...          |.||||||||||||||:    ||..:
plant   141 FDWNEAEPRRIGTSSIDTTCTIWDIEREV----------VDTQLIAHDKEVYDIAW----GGVGV 191

  Fly   192 FASVGADGSVRMFDLRHLEHSTIIYE--DPAHTALLRLAWNKQDPNYLATVAMDSCEVIILDVRV 254
            ||||..|||||:||||..||||||||  :|: |.|:||:||||||.|:|||.|.|.::::||:|.
plant   192 FASVSEDGSVRVFDLRDKEHSTIIYESGEPS-TPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRF 255

  Fly   255 PCTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIE---DPILAYTAAEGE 316
            |..||..|..|:|.||.||||||||.|||:||||.|||||||..|.:.:|   ||||||||. .|
plant   256 PALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAG-AE 319

  Fly   317 VNQIQWGATQPDWIAICYNKACEILRV 343
            |.|:||.::||||:||.::...:||||
plant   320 VEQLQWSSSQPDWVAIAFSNKLQILRV 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wapNP_001245797.1 WD40 19..295 CDD:421866 159/282 (56%)
WD40 repeat 75..117 CDD:293791 19/44 (43%)
WD40 repeat 125..171 CDD:293791 24/45 (53%)
WD40 repeat 177..217 CDD:293791 26/39 (67%)
WD40 repeat 224..264 CDD:293791 22/39 (56%)
WD40 repeat 269..294 CDD:293791 20/24 (83%)
LWD2NP_189298.1 WD40 repeat 85..124 CDD:293791 19/38 (50%)
WD40 <88..296 CDD:421866 130/223 (58%)
WD40 repeat 138..174 CDD:293791 23/45 (51%)
WD40 repeat 182..218 CDD:293791 26/39 (67%)
WD40 repeat 225..264 CDD:293791 21/38 (55%)
WD40 repeat 270..313 CDD:293791 29/42 (69%)
WD40 repeat 320..343 CDD:293791 10/22 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 290 1.000 Domainoid score I362
eggNOG 1 0.900 - - E1_KOG0290
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55930
Inparanoid 1 1.050 400 1.000 Inparanoid score I466
OMA 1 1.010 - - QHG53629
OrthoDB 1 1.010 - - D750776at2759
OrthoFinder 1 1.000 - - FOG0003024
OrthoInspector 1 1.000 - - otm2535
orthoMCL 1 0.900 - - OOG6_102242
Panther 1 1.100 - - O PTHR19919
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2014
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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