DRSC/TRiP Functional Genomics Resources

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Protein Alignment wap and swan-1

DIOPT Version :10

Sequence 1:NP_608461.1 Gene:wap / 33131 FlyBaseID:FBgn0266848 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_506418.1 Gene:swan-1 / 179876 WormBaseID:WBGene00009977 Length:388 Species:Caenorhabditis elegans


Alignment Length:348 Identity:186/348 - (53%)
Similarity:239/348 - (68%) Gaps:16/348 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIE-EYN----NKVQIISLDEDTSEFSAKSTF 66
            :|.||||:.:...||:..||.:.|.:||||:|:..: ..|    |||.|:.|.::|.|....::|
 Worm    46 RRCEIYKFTSDQQLYASAWSNKNDIKFRLAVGTVSDVSVNPCAANKVSIVQLKDETGELVETASF 110

  Fly    67 DHPYPTTKIMWIPDSKGVYPDLLATSGDYLRVWRAGEPDTRLECVLNNNKNSDFCAPLTSFDWNE 131
            ...:|...:.:|||...|||||:||:.|.||:||..:.....:.|:.||.||.:.:.||||||||
 Worm   111 PMEFPANAVGFIPDPDNVYPDLIATTSDCLRLWRVVDGKVHPDAVMINNTNSQYGSALTSFDWNE 175

  Fly   132 VDPNLVGTSSIDTTCTIWGLETG------QPHARVYVAGHVKTQLIAHDKEVYDIAFSRAGGGRD 190
            ::|..:|.||:||||||:.:|.|      :|.|..    .:|||||||||.|:||.|::..||||
 Worm   176 LEPRYIGVSSVDTTCTIYDVEVGCAIGQTKPTAPF----TLKTQLIAHDKPVHDIEFAKINGGRD 236

  Fly   191 MFASVGADGSVRMFDLRHLEHSTIIYEDPAHTALLRLAWNKQDPNYLATVAMDSCEVIILDVRVP 255
            .||:||||||.||||||||.||||:||||....|.||:||||:|.::|..|.:|.||.|||:|:|
 Worm   237 HFATVGADGSARMFDLRHLNHSTIVYEDPNKEKLQRLSWNKQEPYFMALFAENSQEVQILDIRMP 301

  Fly   256 CTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAEGEVNQI 320
            |..:.||.||...||||||||||..||||||||.||||||:||:||.::||||||:|. ||||||
 Worm   302 CNILCRLRNHTGPVNGIAWAPHSPHHICTAGDDSQALIWDLQQVPRPVDDPILAYSAG-GEVNQI 365

  Fly   321 QWGATQPDWIAICYNKACEILRV 343
            .||....:|||||:||..|||||
 Worm   366 HWGPVHSNWIAICFNKTLEILRV 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wapNP_608461.1 WD40 19..295 CDD:475233 148/286 (52%)
WD40 repeat 75..117 CDD:293791 18/41 (44%)
WD40 repeat 125..171 CDD:293791 24/51 (47%)
WD40 repeat 177..217 CDD:293791 28/39 (72%)
WD40 repeat 224..264 CDD:293791 21/39 (54%)
WD40 repeat 269..294 CDD:293791 21/24 (88%)
swan-1NP_506418.1 WD40 39..341 CDD:475233 153/298 (51%)
WD40 repeat 68..110 CDD:293791 14/41 (34%)
WD40 repeat 116..161 CDD:293791 18/44 (41%)
WD40 repeat 169..217 CDD:293791 24/51 (47%)
WD40 repeat 223..263 CDD:293791 28/39 (72%)
WD40 repeat 270..312 CDD:293791 22/41 (54%)
WD40 308..>385 CDD:475233 53/77 (69%)
WD40 repeat 315..340 CDD:293791 21/24 (88%)

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