DRSC/TRiP Functional Genomics Resources

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Protein Alignment tilB and Lrrcc1

DIOPT Version :10

Sequence 1:NP_608460.1 Gene:tilB / 33130 FlyBaseID:FBgn0014395 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_001094115.3 Gene:Lrrcc1 / 266808 RGDID:628722 Length:1025 Species:Rattus norvegicus


Alignment Length:336 Identity:89/336 - (26%)
Similarity:135/336 - (40%) Gaps:80/336 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LISTLEEISLHQEDIE---VIEHIQNWCRDLKILLLQSNLIARLENLHKLKRLEYLNVAINNIER 80
            |.|:|..|:||..:|.   .|:||.|    |:.|.|.||.|:::|.|:.|.:|..||::.|.|.|
  Rat    36 LDSSLHAINLHCNNISKITSIDHIWN----LRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITR 96

  Fly    81 VENLEGCESLSKLDLTLNFIRELTSVESLCG-NYNLR--------------------------EL 118
            ||.||...:|::|:|:.|.|.:|:.:..|.| .|.||                          .|
  Rat    97 VEGLEALVNLTRLNLSYNHISDLSGLIPLHGLKYKLRYIDLHSNYIDSIHHLLQCTVGLHFLTNL 161

  Fly   119 VL----IGNPCVDYPHYRDYVVATLPQLNSLDC---------VEITPSERLRALRELSKNRSIIV 170
            :|    .|||....|.||..::.|||||..|||         :|...|..|:....|..|   :|
  Rat   162 ILEKDGEGNPICLVPGYRAIILQTLPQLRILDCKNIFGEPVSLEEMNSSHLQCFEGLLDN---LV 223

  Fly   171 QKQVEQDIERDEQRIRVAKQQSA--------LAEHCAGIEDEEERIKAFWQAKSEHCPEIRTEIA 227
            ......:|..||    |....||        |.|..:  ..||..:.:...|.|....:|..|..
  Rat   224 SSDSPLNISEDE----VVDNMSAPPIDVLPPLEEFTS--TPEENVLTSLLSACSSEPEKINHENN 282

  Fly   228 RQHRLGRER---------HETKS------PLDPLKPQRNLFAPCGRPY-NLNQAKLPFKFRDEAD 276
            .|:.:..::         :||.:      |...|:|:|:........| |..:.......|.:..
  Rat   283 FQNEMKLQKLDDQILQLLNETNNSLIDNVPEKDLRPKRDTDITSESDYGNRKECSRKVSRRTKIP 347

  Fly   277 HYLLQLEVYRH 287
            :|...::..:|
  Rat   348 YYTRTIQSIKH 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tilBNP_608460.1 PPP1R42 <23..155 CDD:455733 57/174 (33%)
leucine-rich repeat 23..45 CDD:275378 9/24 (38%)
leucine-rich repeat 46..67 CDD:275378 9/20 (45%)
leucine-rich repeat 68..89 CDD:275378 10/20 (50%)
leucine-rich repeat 90..114 CDD:275378 8/24 (33%)
Lrrcc1NP_001094115.3 PPP1R42 25..197 CDD:455733 57/164 (35%)
leucine-rich repeat 40..61 CDD:275378 8/20 (40%)
leucine-rich repeat 62..83 CDD:275378 9/20 (45%)
leucine-rich repeat 84..105 CDD:275378 10/20 (50%)
leucine-rich repeat 106..131 CDD:275378 8/24 (33%)
leucine-rich repeat 132..145 CDD:275378 2/12 (17%)
leucine-rich repeat 158..188 CDD:275380 10/29 (34%)
GumC <407..>639 CDD:442439
SMC_prok_B 543..>912 CDD:274008
CwlO1 830..>1024 CDD:443091
Blue background indicates that the domain is not in the aligned region.

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