DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and lsamp

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001034921.1 Gene:lsamp / 664692 ZFINID:ZDB-GENE-090108-1 Length:333 Species:Danio rerio


Alignment Length:337 Identity:92/337 - (27%)
Similarity:143/337 - (42%) Gaps:73/337 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 FEPDFVIPLE------NVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIH 154
            ||...||.:|      |:||.||......|.|::    :||        ||||:  :...|:...
Zfish    20 FEGFPVISVESQRSTDNITIRQGDTTVIRCYVDD----KVS--------KVAWL--NRSNIIFAG 70

  Fly   155 EHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQTATLEV--VIPPDIINEE 217
            |...:.:.|:.:.......::|.|:.|.:.|.|.|.|.:.|   |.|:.|.:|  ::....|..:
Zfish    71 EDKWSLDPRVELVTQGQLEYSLRIQKVDVFDEGPYTCSIQT---KQQSKTSQVYLIVQVPAIIYK 132

  Fly   218 TSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQSVE-GEMLTLSKITR 281
            .|.|:.|.||.:..|.|.|.|.|.|.||||        ..|.|     |:::: ||.|.:|.:.|
Zfish   133 VSEDITVNEGSNVALTCLANGRPDPAITWR--------LLNPS-----AEALDVGEYLEISGVVR 184

  Fly   282 SEMGAYMCIASNGVPPTVSKRMKLQVHFHPL---VQVPNQLVG-APVLTDVTLICNVEASPKAIN 342
            |:.|.|.|.|||.|.....|.:.:.|::.|.   |:.....|| |.||.     |...|.|:...
Zfish   185 SQAGRYECKASNDVSTPDVKYVNVVVNYPPYIKDVRSSETAVGQAGVLH-----CEASAVPQPEF 244

  Fly   343 YWQRENGEMI--------IAGDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKCISKNSIGDTE 399
            .|.|:...:.        ::|.|              .:|.:..:...|:|.|.|::.|.:|...
Zfish   245 EWYRDERRLSSSQSLTIQVSGSR--------------TVLVVANVTEEDYGNYTCVATNRLGVHN 295

  Fly   400 GTIRLYEMERPG 411
            .::.||   :||
Zfish   296 ASVFLY---KPG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 31/118 (26%)
ig 102..195 CDD:278476 25/98 (26%)
IG_like 219..307 CDD:214653 32/88 (36%)
Ig 221..307 CDD:299845 31/86 (36%)
Ig 311..404 CDD:299845 21/104 (20%)
IG_like 327..405 CDD:214653 14/85 (16%)
lsampNP_001034921.1 Ig 34..124 CDD:299845 28/106 (26%)
IG_like 36..124 CDD:214653 28/104 (27%)
IG_like 134..197 CDD:214653 29/75 (39%)
IGc2 141..199 CDD:197706 27/70 (39%)
I-set 213..300 CDD:254352 21/105 (20%)
Ig 231..298 CDD:143165 16/85 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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