DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and dscama

DIOPT Version :9

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:410 Identity:101/410 - (24%)
Similarity:153/410 - (37%) Gaps:92/410 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITNND 162
            |.|:.|.|....:.|......|||.       |||   .|..:.|.| |.|:|.|.....|.|.|
Zfish   597 PPFIQPFEFPRYSIGHRVFVPCVVR-------SGD---LPISITWEK-DGKSINASLGVTIDNID 650

  Fly   163 RLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDP--MKMQTATLEVVIPPDIINEETSGDMMVP 225
            ..|         :|.|..::....|.|.|....|.  :|.| :.|.|.:||....:....|.:. 
Zfish   651 FTS---------SLRISNLQRVHNGTYTCIAQNDAAVVKYQ-SQLIVRVPPRFKVQPQDQDGIY- 704

  Fly   226 EGGSAKLVCRARGHPKPKITWRREDGREI-----IARNGSHQKTKAQSVEGEMLTLSKITRSEMG 285
             |.|..|.|.|.|.|:|.|.|:...|..:     ||.|...   :.|.:....|.:..:...:.|
Zfish   705 -GKSVILNCSADGEPRPTIEWKYSKGAGVPQFQPIALNSGF---RVQLLGNGSLLIKHVLEEDAG 765

  Fly   286 AYMCIASNGVPPTVSKRMKLQVHFHPLVQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGE 350
            .|:|..||.|...|||.|.|.      |::|..:...|..:..|....:|.|.||       :||
Zfish   766 YYLCKVSNDVGADVSKSMYLN------VKIPAMITSYPNNSLATKGEKIEMSCKA-------HGE 817

  Fly   351 --MIIAGDRYALTEKENNMYAIEMILH-----------IKRLQ-----SSDFGGYKCISKNSIGD 397
              :::..::....||:::|...:|..|           :..||     ..|.|.:.|.:.||.|:
Zfish   818 KPIMVRWEKEVEKEKQSHMINPDMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCHAINSYGE 882

  Fly   398 TEGTIRLYEMERP------------------------GKKILRDDDLNEVSKNEVVQKDTRSEDG 438
            ..|.::|...|.|                        |..::...|:...:|.|..::..|:.|.
Zfish   883 DRGILQLTVQEPPEPPKVEIREVKERTIALRWTMGFDGNSLITGYDIECKNKTETWERARRTRDV 947

  Fly   439 SRNLNGRLYKDRAPDQHPAS 458
            |..||    :....:.||:|
Zfish   948 SPTLN----QATIIELHPSS 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 I-set 98..209 CDD:254352 32/112 (29%)
ig 102..195 CDD:278476 25/92 (27%)
IG_like 219..307 CDD:214653 28/92 (30%)
Ig 221..307 CDD:299845 28/90 (31%)
Ig 311..404 CDD:299845 24/110 (22%)
IG_like 327..405 CDD:214653 21/95 (22%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142
I-set 236..311 CDD:254352
IG_like 321..402 CDD:214653
I-set 408..502 CDD:333254
IGc2 524..579 CDD:197706
Ig 614..679 CDD:319273 23/84 (27%)
Ig_DSCAM 708..787 CDD:143211 25/87 (29%)
Ig 805..898 CDD:325142 23/99 (23%)
FN3 894..988 CDD:238020 13/74 (18%)
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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