DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-beta and hspg2

DIOPT Version :10

Sequence 1:NP_001138225.1 Gene:DIP-beta / 33125 FlyBaseID:FBgn0259245 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_021325650.1 Gene:hspg2 / 565429 ZFINID:ZDB-GENE-080807-4 Length:3701 Species:Danio rerio


Alignment Length:570 Identity:125/570 - (21%)
Similarity:207/570 - (36%) Gaps:142/570 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSGLVGLGTGTGTGSGCGPAIRW---- 70
            |.|...|:|     .||....||.|......|.:.......|..|..||.|||     ::|    
Zfish  2222 SSEAHIDVS-----VTKGENILSGVIIQPPSASVIEGEALDLNCLVPGTSTGS-----VKWSRAG 2276

  Fly    71 -------QLL---LLLLLGNCID-----LTVSN--------------KISSVGAFEPDFVIPLEN 106
                   |:|   |.:|..:..|     .||.|              ..:|:|...|...|...:
Zfish  2277 GLLSSNHQVLETRLRILRASADDTGDYICTVENGPSPQKATVSVSVTSSASLGLQTPIISIEPHS 2341

  Fly   107 VTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHVITNN----DRLSVQ 167
            ..:.||..|:|.|.|:|          .:.|.::.|              .:|||    |.:.| 
Zfish  2342 AVVKQGESASFRCKVHN----------GAQPVRLEW--------------KLTNNLPLPDNVKV- 2381

  Fly   168 HNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQTATLEVVI---PPDIINEETSGDMMVPEGGS 229
              ..::..:.:...:.::.|.|.| |.::...|..:.:.:::   |..::.  .:|.:.|..|..
Zfish  2382 --GPDSSIMTVTNAQAKNQGTYRC-VASNLYGMTHSIVSLIVRESPKAVVT--PAGPVRVRVGDP 2441

  Fly   230 AKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQS---VEGEMLTLSKITRSE-MGAYMCI 290
            ..|.|:|.|.|:|.:.|.|.|         :::||...|   |:...:....:.|.| .|.|:|.
Zfish  2442 INLECQAAGEPRPSVRWHRLD---------NNRKTMLSSTVPVDSSAIIQVLVARPEDSGTYVCS 2497

  Fly   291 ASNGVPPTVSKRMKLQVHFHPLV-QVPNQLVGAPVL-----TDVTLICNVEASPKAINYWQRENG 349
            |.|. ..|...|:::.|...|.| .||...|..|::     :..||.|:....||....|.:|  
Zfish  2498 AQNN-QGTTETRVEVFVEGGPQVPTVPRASVREPMIIVVEGSTATLHCDAHGFPKPTITWFKE-- 2559

  Fly   350 EMIIAGDRYALTEKENNMYAIEMILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYEMERPGKKI 414
                   |.:|..:..   .::..|.:..:...|.|.|.|.:.|.:|.:|.||.| |::.|....
Zfish  2560 -------RSSLPWRHK---IVDNSLILPNVGRQDSGQYVCNATNHLGTSEVTIML-EVDTPPYAT 2613

  Fly   415 LRDDDLNEVSKNEVVQ-----------------------KDTRSEDGSRNLNGRLYKDRAPDQHP 456
            ...:|:: |...||::                       ...:.:.|...:|.....|....:..
Zfish  2614 SLPNDVS-VRVGEVIRLQCLAHGTPPLRYEWTKINGSLPSTAQLQGGDLQINLAKENDAGTYRCV 2677

  Fly   457 AS---GSDQLLGRGTMRLIGTFLLALLVLFTALAEAGPTTLSCRTKGGRQ 503
            ||   |..:.|.:.::|...:..::..|...||..|  ...:|..|||.|
Zfish  2678 ASNKVGKSEALAKVSVRSSLSVKVSPQVEVKALGSA--VEFTCAAKGGLQ 2725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-betaNP_001138225.1 Ig 98..209 CDD:472250 21/114 (18%)
Ig strand B 115..119 CDD:409353 2/3 (67%)
Ig strand C 139..143 CDD:409353 0/3 (0%)
Ig strand E 174..178 CDD:409353 0/3 (0%)
Ig strand F 188..193 CDD:409353 2/4 (50%)
Ig strand G 202..205 CDD:409353 0/2 (0%)
Ig 211..307 CDD:472250 25/99 (25%)
Ig strand B 230..234 CDD:409353 1/3 (33%)
Ig strand C 243..247 CDD:409353 0/3 (0%)
Ig strand E 272..276 CDD:409353 0/3 (0%)
Ig strand F 286..291 CDD:409353 2/4 (50%)
Ig strand G 300..303 CDD:409353 0/2 (0%)
IG_like 327..405 CDD:214653 19/77 (25%)
Ig strand B 328..332 CDD:409353 2/3 (67%)
Ig strand C 341..346 CDD:409353 1/4 (25%)
Ig strand E 365..376 CDD:409353 1/10 (10%)
Ig strand F 386..391 CDD:409353 2/4 (50%)
Ig strand G 399..402 CDD:409353 1/2 (50%)
hspg2XP_021325650.1 SEA 84..198 CDD:470595
LDLa 216..251 CDD:238060
LDLa 277..311 CDD:238060
LDLa 317..351 CDD:238060
LDLa 360..395 CDD:238060
Ig_Perlecan_like 413..490 CDD:143220
Ig strand B 416..422 CDD:143220
Ig strand C 429..434 CDD:143220
Ig strand E 454..458 CDD:143220
Ig strand F 467..473 CDD:143220
Ig strand G 482..488 CDD:143220
Laminin_B 598..732 CDD:459652
EGF_Lam 766..814 CDD:238012
EGF_Lam 831..869 CDD:238012
Laminin_EGF 871..923 CDD:395007
Laminin_B 991..1125 CDD:459652
Laminin_EGF 1159..1206 CDD:395007
EGF_Lam 1208..1261 CDD:238012
Laminin_EGF 1272..1315 CDD:395007
Laminin_B 1536..1671 CDD:459652
EGF_Lam 1705..1754 CDD:238012
EGF_Lam 1755..1811 CDD:238012
IG_like 1823..1903 CDD:214653
Ig strand B 1834..1838 CDD:409549
Ig strand C 1847..1852 CDD:409549
Ig strand E 1870..1873 CDD:409549
Ig strand F 1883..1888 CDD:409549
Ig strand G 1896..1899 CDD:409549
IgI_Perlecan_like 1911..1996 CDD:409412
Ig strand A 1911..1915 CDD:409412
Ig strand A' 1920..1923 CDD:409412
Ig strand B 1927..1937 CDD:409412
Ig strand C 1943..1947 CDD:409412
Ig strand C' 1950..1952 CDD:409412
Ig strand D 1957..1962 CDD:409412
Ig strand E 1963..1969 CDD:409412
Ig strand F 1976..1984 CDD:409412
Ig strand G 1987..1996 CDD:409412
I-set 2025..2109 CDD:400151
Ig strand B 2042..2046 CDD:409353
Ig strand C 2055..2059 CDD:409353
Ig strand E 2075..2079 CDD:409353
Ig strand F 2089..2094 CDD:409353
Ig strand G 2102..2105 CDD:409353
I-set 2119..2231 CDD:400151 4/13 (31%)
Ig strand B 2136..2140 CDD:409420
Ig strand C 2149..2153 CDD:409420
Ig strand E 2197..2201 CDD:409420
Ig strand F 2211..2216 CDD:409420
Ig strand G 2224..2227 CDD:409420 1/2 (50%)
Ig 2241..2309 CDD:472250 17/72 (24%)
Ig strand B 2256..2260 CDD:409353 1/3 (33%)
Ig strand C 2269..2273 CDD:409353 1/8 (13%)
Ig strand F 2302..2307 CDD:409353 0/4 (0%)
IG_like 2339..2420 CDD:214653 19/108 (18%)
Ig strand B 2350..2354 CDD:409399 2/3 (67%)
Ig strand C 2364..2369 CDD:409399 1/18 (6%)
Ig strand E 2386..2390 CDD:409399 0/3 (0%)
Ig strand F 2400..2405 CDD:409399 2/5 (40%)
Ig strand G 2415..2418 CDD:409399 0/2 (0%)
IG_like 2432..2513 CDD:214653 25/90 (28%)
Ig strand B 2442..2446 CDD:409353 1/3 (33%)
Ig strand C 2455..2459 CDD:409353 0/3 (0%)
Ig strand E 2479..2483 CDD:409353 0/3 (0%)
Ig strand F 2493..2498 CDD:409353 2/4 (50%)
Ig strand G 2506..2509 CDD:409353 0/2 (0%)
I-set 2517..2606 CDD:400151 26/101 (26%)
Ig strand B 2540..2544 CDD:409353 2/3 (67%)
Ig strand C 2553..2557 CDD:409353 0/3 (0%)
Ig strand E 2572..2576 CDD:409353 1/3 (33%)
Ig strand F 2586..2591 CDD:409353 2/4 (50%)
Ig strand G 2599..2602 CDD:409353 1/2 (50%)
Ig 2610..2693 CDD:472250 11/83 (13%)
Ig strand B 2627..2631 CDD:409357 0/3 (0%)
Ig strand C 2640..2644 CDD:409357 0/3 (0%)
Ig strand E 2659..2663 CDD:409357 1/3 (33%)
Ig strand F 2673..2678 CDD:409357 0/4 (0%)
Ig strand G 2686..2689 CDD:409357 0/2 (0%)
Ig 2699..2778 CDD:472250 9/29 (31%)
Ig strand B 2714..2718 CDD:409549 0/3 (0%)
Ig strand C 2726..2729 CDD:409549 125/570 (22%)
Ig strand E 2744..2748 CDD:409549
Ig strand F 2758..2763 CDD:409549
Ig strand G 2771..2774 CDD:409549
I-set 2785..2867 CDD:400151
Ig strand B 2801..2805 CDD:409394
Ig strand C 2814..2818 CDD:409394
Ig strand E 2834..2837 CDD:409394
Ig strand F 2847..2852 CDD:409394
Ig strand G 2859..2862 CDD:409394
I-set 2871..2954 CDD:400151
Ig strand B 2888..2892 CDD:409390
Ig strand C 2901..2905 CDD:409390
Ig strand E 2920..2924 CDD:409390
Ig strand F 2934..2939 CDD:409390
Ig strand G 2947..2950 CDD:409390
LamG 2961..3119 CDD:238058
EGF_CA <3146..3175 CDD:238011
LamG 3226..3377 CDD:238058
EGF 3402..3433 CDD:394967
EGF_CA 3441..3470 CDD:238011
LamG 3497..3671 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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